Variant report

Variant	rs34870994
Chromosome Location	chr6:149813527-149813528
allele	AC/GT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10485097	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1125107	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12524946	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12663698	0.83[ASN][1000 genomes]
rs12665533	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1474640	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17732745	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2105200	0.82[ASN][1000 genomes]
rs2341550	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2341551	0.84[ASN][1000 genomes]
rs2341768	0.83[ASN][1000 genomes]
rs2880075	0.84[ASN][1000 genomes]
rs3813675	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4869797	0.82[AMR][1000 genomes]
rs4897128	0.83[AMR][1000 genomes]
rs4897130	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4897131	0.84[ASN][1000 genomes]
rs4897132	0.86[ASN][1000 genomes]
rs4897133	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4897137	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4897138	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60404985	0.83[ASN][1000 genomes]
rs62442787	0.82[ASN][1000 genomes]
rs62442788	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62442789	0.81[ASN][1000 genomes]
rs62442790	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62442792	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62442793	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62442795	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62442798	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6570968	0.83[ASN][1000 genomes]
rs6911016	0.83[ASN][1000 genomes]
rs6929614	0.85[ASN][1000 genomes]
rs761617	0.80[ASN][1000 genomes]
rs7753560	0.84[ASN][1000 genomes]
rs7774559	0.83[ASN][1000 genomes]
rs7774597	0.83[ASN][1000 genomes]
rs909792	0.84[ASN][1000 genomes]
rs9322184	0.83[ASN][1000 genomes]
rs9322185	0.80[ASN][1000 genomes]
rs9377220	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9377221	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9377223	0.83[ASN][1000 genomes]
rs9377224	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9390684	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9390687	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9390688	0.81[ASN][1000 genomes]
rs9390689	0.81[AMR][1000 genomes]
rs9399689	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9404042	0.81[ASN][1000 genomes]
rs9406344	0.81[ASN][1000 genomes]
rs9498368	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9689569	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9800648	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv1832313	chr6:149789511-149840750	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149804400-149824600	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:149806400-149832000	Weak transcription	HSMMtube	muscle
3	chr6:149806400-149844800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:149806800-149825200	Weak transcription	HSMM	muscle
5	chr6:149806800-149832400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:149807000-149814000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:149807000-149814600	Weak transcription	Fetal Thymus	thymus
8	chr6:149807000-149832200	Weak transcription	Lung	lung
9	chr6:149807000-149849000	Weak transcription	Gastric	stomach
10	chr6:149807200-149815600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:149807200-149824800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:149807200-149832000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:149807200-149835000	Weak transcription	Spleen	Spleen
14	chr6:149807200-149842600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:149807600-149813800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:149808000-149814000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:149810200-149814200	Weak transcription	Stomach Mucosa	stomach
18	chr6:149810200-149819800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:149810400-149814200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:149810400-149821200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:149810600-149814000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:149810800-149813800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:149810800-149814000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:149810800-149851600	Weak transcription	Esophagus	oesophagus
25	chr6:149811200-149814000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr6:149811200-149814400	Weak transcription	HepG2	liver
27	chr6:149811200-149860600	Weak transcription	Aorta	Aorta
28	chr6:149811400-149814000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:149811400-149826600	Weak transcription	Fetal Intestine Small	intestine
30	chr6:149811600-149814000	Weak transcription	Primary B cells from cord blood	blood
31	chr6:149812200-149814000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr6:149812400-149814000	Weak transcription	GM12878-XiMat	blood
33	chr6:149813000-149814000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr6:149813200-149818000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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