Variant report

Variant	rs9800648
Chromosome Location	chr6:149849132-149849133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149846689..149849574-chr6:149866387..149868878,2	K562	blood:
2	chr6:149840862..149843868-chr6:149845799..149849456,4	K562	blood:

Variant related genes	Relation type
ENSG00000131013	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10485097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1125107	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524946	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12663698	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12665533	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474640	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17732745	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2105200	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2341550	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2341551	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2341768	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28580659	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2880075	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34870994	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3813675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4869797	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4897128	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4897130	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4897131	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4897132	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4897133	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4897137	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897138	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897139	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60404985	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62439778	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62442787	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62442788	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62442789	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62442790	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62442792	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62442793	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62442795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62442798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570968	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6911016	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6929614	0.97[ASN][1000 genomes]
rs761617	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7753560	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7774559	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7774597	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs909792	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322184	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9322185	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373594	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9373595	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9373596	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9377220	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9377221	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9377223	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9377224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390684	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9390687	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390688	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9390689	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399689	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399690	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9404042	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9404043	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9404044	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9406344	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9498368	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689569	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9800648	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149810800-149851600	Weak transcription	Esophagus	oesophagus
2	chr6:149811200-149860600	Weak transcription	Aorta	Aorta
3	chr6:149820400-149850200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:149820600-149851400	Weak transcription	NHLF	lung
5	chr6:149820600-149865200	Weak transcription	Stomach Mucosa	stomach
6	chr6:149823800-149851800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:149824400-149862200	Strong transcription	Liver	Liver
8	chr6:149824600-149864200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:149825000-149851800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:149825200-149850200	Weak transcription	Right Ventricle	heart
11	chr6:149829600-149851600	Weak transcription	Colonic Mucosa	Colon
12	chr6:149830600-149865600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:149831400-149851800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:149832000-149865800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:149832200-149862200	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr6:149832800-149850200	Weak transcription	Lung	lung
17	chr6:149835000-149862000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:149835000-149862200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:149835000-149862200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:149835000-149862200	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr6:149835000-149863600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:149835200-149862400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr6:149835400-149850400	Weak transcription	Spleen	Spleen
24	chr6:149835800-149849800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:149836000-149862200	Strong transcription	Fetal Thymus	thymus
26	chr6:149836200-149862400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr6:149836400-149852200	Strong transcription	HSMM	muscle
28	chr6:149836400-149862800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:149837200-149862200	Strong transcription	Placenta	Placenta
30	chr6:149837200-149862200	Strong transcription	Osteobl	bone
31	chr6:149837400-149866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:149837600-149862200	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr6:149838600-149862400	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:149838800-149862200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:149838800-149863000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:149839000-149863800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:149839200-149852200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:149839200-149862200	Strong transcription	Fetal Intestine Large	intestine
39	chr6:149839200-149862400	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr6:149839400-149856200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:149839400-149858000	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr6:149839400-149862200	Strong transcription	Adipose Nuclei	Adipose
43	chr6:149839800-149862000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:149839800-149862400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:149839800-149862400	Strong transcription	Dnd41	blood
46	chr6:149839800-149862800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:149840000-149862200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:149840200-149862000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:149840200-149862200	Strong transcription	Duodenum Mucosa	Duodenum
50	chr6:149840200-149862400	Strong transcription	HUES64 Cell Line	embryonic stem cell

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