The 2.0 version of rSNPBase

Variant report

Variant rs12524946
Chromosome Location chr6:149821322-149821323
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:149804400-149824600 Weak transcription Brain Hippocampus Middle brain
2 chr6:149806400-149832000 Weak transcription HSMMtube muscle
3 chr6:149806400-149844800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr6:149806800-149825200 Weak transcription HSMM muscle
5 chr6:149806800-149832400 Weak transcription HUES6 Cell Line embryonic stem cell
6 chr6:149807000-149832200 Weak transcription Lung lung
7 chr6:149807000-149849000 Weak transcription Gastric stomach
8 chr6:149807200-149824800 Weak transcription Primary monocytes fromperipheralblood blood
9 chr6:149807200-149832000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr6:149807200-149835000 Weak transcription Spleen Spleen
11 chr6:149807200-149842600 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr6:149810800-149851600 Weak transcription Esophagus oesophagus
13 chr6:149811200-149860600 Weak transcription Aorta Aorta
14 chr6:149811400-149826600 Weak transcription Fetal Intestine Small intestine
15 chr6:149814800-149825200 Weak transcription Fetal Thymus thymus
16 chr6:149815200-149825600 Weak transcription Duodenum Mucosa Duodenum
17 chr6:149815600-149824800 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr6:149815600-149845000 Weak transcription Small Intestine intestine
19 chr6:149816600-149825200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr6:149817000-149830800 Weak transcription Brain Angular Gyrus brain
21 chr6:149817600-149821600 Enhancers Primary T helper 17 cells PMA-I stimulated --
22 chr6:149817600-149822200 Weak transcription Primary B cells from cord blood blood
23 chr6:149817800-149821600 Enhancers Primary T helper cells PMA-I stimulated --
24 chr6:149817800-149829000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
25 chr6:149818000-149825400 Weak transcription NHDF-Ad bronchial
26 chr6:149818200-149824600 Weak transcription Primary B cells from peripheral blood blood
27 chr6:149818200-149830400 Weak transcription ES-I3 Cell Line embryonic stem cell
28 chr6:149818400-149825600 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr6:149818400-149826400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr6:149818400-149843800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr6:149818600-149822400 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr6:149818600-149826600 Weak transcription Primary hematopoietic stem cells blood
33 chr6:149818800-149828200 Weak transcription Primary T killer naive cells fromperipheralblood blood
34 chr6:149818800-149845000 Weak transcription A549 lung
35 chr6:149819000-149827200 Weak transcription GM12878-XiMat blood
36 chr6:149819200-149832000 Weak transcription Stomach Smooth Muscle stomach
37 chr6:149819400-149825400 Weak transcription Primary T helper naive cells from peripheral blood blood
38 chr6:149819400-149825600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
39 chr6:149819400-149828800 Weak transcription Primary T killer memory cells from peripheral blood blood
40 chr6:149819600-149821400 Enhancers Primary T regulatory cells fromperipheralblood blood
41 chr6:149819600-149821600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
42 chr6:149819600-149822200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr6:149819800-149825400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
44 chr6:149819800-149828200 Weak transcription iPS-20b Cell Line embryonic stem cell
45 chr6:149820000-149822800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr6:149820000-149824600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr6:149820000-149825400 Weak transcription HUES48 Cell Line embryonic stem cell
48 chr6:149820000-149826600 Weak transcription Fetal Intestine Large intestine
49 chr6:149820200-149821400 Strong transcription Primary T cells from cord blood blood
50 chr6:149820200-149824400 Weak transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015