Variant report

Variant	rs11155662
Chromosome Location	chr6:149913867-149913868
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149910172..149914647-chr6:149914735..149918392,5	K562	blood:

Variant related genes	Relation type
ENSG00000220848	Chromatin interaction
ENSG00000202343	Chromatin interaction

Extended variants
information (count: 245 )
Associated
traits (count: 22 )

rSNPs within LD-proxies of this variant (count:240)

rs_ID	r²[population]
rs10214845	0.87[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs10457851	0.87[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs10485097	0.81[CHB][hapmap]
rs10747275	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10747276	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10782310	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10782311	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10782312	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10782313	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10782314	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10782315	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10782316	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10782317	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10782318	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1080670	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10872643	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10872644	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10872645	0.82[EUR][1000 genomes]
rs10872646	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10872647	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs10872648	0.83[EUR][1000 genomes]
rs10872649	0.84[EUR][1000 genomes]
rs10872650	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1112730	0.87[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap]
rs11155668	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11155669	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11155670	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11155671	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11155674	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155675	0.83[EUR][1000 genomes]
rs11155677	0.83[EUR][1000 genomes]
rs11155679	0.82[EUR][1000 genomes]
rs11155685	0.87[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap]
rs1125	0.86[ASW][hapmap];0.86[CEU][hapmap];0.82[LWK][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs1125107	0.87[CHB][hapmap]
rs12111376	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12174349	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12174716	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12175504	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12178310	0.85[EUR][1000 genomes]
rs12183664	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12191643	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12193364	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12195866	0.87[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12200670	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12201033	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12203703	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12205092	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12206402	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12211511	0.82[EUR][1000 genomes]
rs12234128	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12523793	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12524946	0.81[CHB][hapmap]
rs12526675	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12528279	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12529698	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12660304	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12662162	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12662174	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12665533	0.81[CHB][hapmap]
rs1413654	0.87[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs1474640	0.81[CHB][hapmap]
rs1572229	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17745062	0.82[EUR][1000 genomes]
rs1934534	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2064520	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2064521	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2065663	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2065664	0.87[CEU][hapmap];0.80[CHB][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap]
rs2185352	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2297928	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2297930	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2297932	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2341551	0.81[CHB][hapmap]
rs2341768	0.81[CHB][hapmap]
rs2880075	0.81[CHB][hapmap]
rs34157004	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34337297	0.83[EUR][1000 genomes]
rs35031906	0.87[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35443312	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35763894	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35830138	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35961297	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35967444	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3734295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763161	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3777949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798761	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3805749	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs3924871	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4039600	0.85[EUR][1000 genomes]
rs4354168	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4380763	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4421206	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4455682	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4869812	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870139	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4870144	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4870267	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870388	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4870493	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4870509	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4870529	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4897137	0.81[CHB][hapmap]
rs4897138	0.81[CHB][hapmap]
rs55849538	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55938765	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55993747	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56091542	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56397000	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57938011	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58189451	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60424881	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62439784	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62439811	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62439836	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62439837	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62439840	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62439842	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62439843	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62441279	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62441284	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66516768	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6913486	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7381555	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7450246	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7740278	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7752594	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7753812	0.87[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7754399	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7767622	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9027	0.85[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs909792	0.81[CHB][hapmap]
rs9285521	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9285522	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9285523	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9285524	0.87[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322184	0.81[CHB][hapmap]
rs9322188	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];1.00[ASN][1000 genomes]
rs9322189	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322190	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322192	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322193	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322194	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322196	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322197	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322198	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322199	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322200	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322203	0.83[ASN][1000 genomes]
rs9322204	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322206	0.87[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322207	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322208	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322209	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9322210	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322214	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322215	0.82[EUR][1000 genomes]
rs9322218	0.90[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs9322219	0.82[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs9372044	0.87[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs9377223	0.81[CHB][hapmap]
rs9377224	0.86[CHB][hapmap]
rs9377228	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9377229	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9377230	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9379314	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9379348	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9383812	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9383844	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393132	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9393175	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9399689	0.81[CHB][hapmap]
rs9399692	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9399693	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9404047	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9404048	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9406286	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9406345	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9406346	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9478291	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9479094	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9479494	0.85[EUR][1000 genomes]
rs9479808	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9479810	0.87[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs9480009	0.84[EUR][1000 genomes]
rs9480031	0.84[EUR][1000 genomes]
rs9485405	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9485408	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9498368	0.81[CHB][hapmap]
rs9498382	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9498383	0.82[ASN][1000 genomes]
rs9498384	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9505823	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9505824	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9505826	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9505967	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9505974	0.87[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs9505982	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9505983	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9688350	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9688452	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9688517	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9688699	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9688750	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9688794	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9688858	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9688861	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9689036	0.86[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap]
rs9689084	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9689269	0.83[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap]
rs9689340	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9689599	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9689702	0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9689716	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9689723	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9717327	0.85[EUR][1000 genomes]
rs9718079	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9766004	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9766037	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9766562	0.83[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs9766886	0.91[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9767105	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9767113	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9767122	0.90[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap]
rs9767123	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9767309	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9767554	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9767555	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9767652	0.85[EUR][1000 genomes]
rs9767713	0.93[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767727	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9800580	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9800603	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9800614	1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9800686	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9800736	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9800806	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9800871	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9968911	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1794633	chr6:149903597-149944908	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:22)

SNP	Gene	Cis/trans	Tissue	Source
rs11155662	FAM65A	trans	cerebellum	SCAN
rs11155662	PPIL4	cis	parietal	SCAN
rs11155662	LATS1	cis	cerebellum	SCAN
rs11155662	LRP11	cis	parietal	SCAN
rs11155662	LRP11	cis	cerebellum	SCAN
rs11155662	NUP43	cis	lymphoblastoid	seeQTL
rs11155662	RP11-350J20.5	cis	Thyroid	GTEx
rs11155662	RP11-350J20.5	cis	lung	GTEx
rs11155662	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs11155662	RP11-350J20.9	cis	Esophagus Mucosa	GTEx
rs11155662	RMND1	cis	cerebellum	SCAN
rs11155662	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs11155662	LRP11	cis	Skin Sun Exposed Lower leg	GTEx
rs11155662	LATS1	cis	parietal	SCAN
rs11155662	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs11155662	RP11-350J20.5	cis	Artery Tibial	GTEx
rs11155662	RAET1G	cis	Thyroid	GTEx
rs11155662	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs11155662	PPIL4	cis	cerebellum	SCAN
rs11155662	GINM1	cis	Whole Blood	GTEx
rs11155662	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs11155662	NUP43	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149888600-149922000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:149888800-149914800	Weak transcription	A549	lung
3	chr6:149889000-149928000	Weak transcription	Stomach Mucosa	stomach
4	chr6:149889200-149919600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:149889400-149924200	Weak transcription	Fetal Heart	heart
6	chr6:149889600-149914200	Weak transcription	Hela-S3	cervix
7	chr6:149889600-149931400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:149893800-149926600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr6:149894200-149920000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:149895600-149923200	Strong transcription	Dnd41	blood
11	chr6:149898400-149919200	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:149898600-149927400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:149899200-149915000	Weak transcription	Esophagus	oesophagus
14	chr6:149899200-149929800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:149900200-149926800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:149900400-149923200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:149901000-149919200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:149901000-149920200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:149901000-149923200	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr6:149901000-149923200	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr6:149901200-149920000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:149901600-149919800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:149901800-149919400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:149902200-149915200	Weak transcription	HMEC	breast
25	chr6:149902200-149920200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:149902800-149929000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:149903200-149914200	Weak transcription	NHEK	skin
28	chr6:149903200-149915000	Weak transcription	Gastric	stomach
29	chr6:149903800-149914200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:149903800-149914200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:149903800-149924200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:149904200-149914200	Weak transcription	Fetal Kidney	kidney
33	chr6:149904400-149914000	Weak transcription	Colonic Mucosa	Colon
34	chr6:149905200-149926200	Strong transcription	Fetal Stomach	stomach
35	chr6:149905400-149919400	Strong transcription	Left Ventricle	heart
36	chr6:149905400-149920000	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:149906000-149918800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:149906800-149922800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:149907000-149919600	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr6:149907000-149925800	Strong transcription	Fetal Thymus	thymus
41	chr6:149907400-149916400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr6:149907400-149918000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr6:149907600-149925800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:149909000-149914000	Weak transcription	Thymus	Thymus
45	chr6:149909000-149914200	Weak transcription	NHLF	lung
46	chr6:149909000-149914800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:149909000-149915000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:149909000-149915000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr6:149909000-149915000	Weak transcription	Pancreas	Pancrea
50	chr6:149909000-149935000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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