Variant report

Variant	rs12174349
Chromosome Location	chr6:150039148-150039149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr6:150039140-150039661	GM12878	blood:	n/a	n/a
2	SIX5	chr6:150039121-150039440	K562	blood:	n/a	n/a
3	YY1	chr6:150038768-150039418	K562	blood:	n/a	chr6:150039404-150039415 chr6:150038774-150038788
4	POLR2A	chr6:150038641-150039718	HUVEC	blood vessel:	n/a	n/a
5	MAX	chr6:150038554-150039645	A549	lung:	n/a	chr6:150038907-150038916
6	GATA1	chr6:150038617-150040028	PBDE	blood:	n/a	chr6:150039753-150039760 chr6:150039692-150039709 chr6:150039753-150039762 chr6:150039701-150039711 chr6:150039701-150039710 chr6:150039703-150039713 chr6:150039753-150039760 chr6:150039703-150039710 chr6:150039703-150039710 chr6:150039752-150039762 chr6:150039754-150039771 chr6:150039746-150039767 chr6:150039753-150039760 chr6:150038726-150038734 chr6:150039701-150039710 chr6:150039703-150039710
7	POLR2A	chr6:150038575-150039695	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr6:150038583-150039915	SK-N-SH	brain:	n/a	chr6:150038907-150038916
9	GABPA	chr6:150038987-150039552	HL-60	blood:	n/a	n/a
10	POLR2A	chr6:150038782-150039586	GM10847	blood:	n/a	n/a
11	ZNF143	chr6:150038612-150039548	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr6:150038583-150039600	H1-hESC	embryonic stem cell:	n/a	n/a
13	HCFC1	chr6:150038185-150040121	Hela-S3	cervix:	n/a	n/a
14	ZNF384	chr6:150039146-150039518	GM12878	blood:	n/a	n/a
15	GABPA	chr6:150038511-150039840	HL-60	blood:	n/a	n/a
16	MAZ	chr6:150038608-150039912	K562	blood:	n/a	chr6:150038907-150038916
17	CEBPD	chr6:150038875-150040063	K562	blood:	n/a	n/a
18	POU2F2	chr6:150038692-150039619	GM12878	blood:	n/a	n/a
19	YY1	chr6:150038611-150039440	H1-hESC	embryonic stem cell:	n/a	chr6:150039404-150039415 chr6:150038774-150038788
20	HEY1	chr6:150038517-150040004	K562	blood:	n/a	chr6:150038920-150038935
21	POLR2A	chr6:150038549-150039919	ECC-1	luminal epithelium:	n/a	n/a
22	NFIC	chr6:150038383-150039537	ECC-1	luminal epithelium:	n/a	n/a
23	CEBPD	chr6:150039085-150039472	HepG2	liver:	n/a	n/a
24	TAF1	chr6:150038940-150039480	GM12878	blood:	n/a	n/a
25	TAF7	chr6:150038987-150039463	K562	blood:	n/a	n/a
26	SIN3AK20	chr6:150038611-150039657	PANC-1	pancreas:	n/a	n/a
27	SP1	chr6:150038478-150039581	A549	lung:	n/a	chr6:150038681-150038690 chr6:150038681-150038691 chr6:150038904-150038914
28	POLR2A	chr6:150038543-150040092	GM12878	blood:	n/a	n/a
29	POLR2A	chr6:150038486-150039669	Hela-S3	cervix:	n/a	n/a
30	REST	chr6:150038528-150039538	PFSK-1	brain:	n/a	n/a
31	PML	chr6:150038623-150039546	MCF-7	breast:	n/a	n/a
32	MAZ	chr6:150038605-150039566	Hela-S3	cervix:	n/a	chr6:150038907-150038916
33	YY1	chr6:150039011-150039322	HCT-116	colon:	n/a	n/a
34	RELA	chr6:150038735-150039848	GM19193	blood:	n/a	n/a
35	GABPA	chr6:150039076-150039462	GM12878	blood:	n/a	n/a
36	SMARCC1	chr6:150038327-150039763	Hela-S3	cervix:	n/a	n/a
37	POLR2A	chr6:150038641-150039600	HEK293	kidney:	n/a	n/a
38	JUND	chr6:150038627-150039467	H1-hESC	embryonic stem cell:	n/a	n/a
39	EGR1	chr6:150038943-150039489	ECC-1	luminal epithelium:	n/a	chr6:150039216-150039230
40	ELK4	chr6:150038717-150039886	Hela-S3	cervix:	n/a	n/a
41	HDAC2	chr6:150038489-150039209	MCF-7	breast:	n/a	chr6:150038883-150038902
42	STAT5A	chr6:150038495-150039940	GM12878	blood:	n/a	n/a
43	GABPA	chr6:150039061-150039515	H1-hESC	embryonic stem cell:	n/a	n/a
44	POLR2A	chr6:150038615-150039984	K562	blood:	n/a	n/a
45	JUN	chr6:150039032-150039962	K562	blood:	n/a	n/a
46	TAF1	chr6:150038451-150039911	ECC-1	luminal epithelium:	n/a	n/a
47	TBP	chr6:150038229-150039962	Hela-S3	cervix:	n/a	n/a
48	CHD1	chr6:150038873-150039457	GM12878	blood:	n/a	n/a
49	TAF1	chr6:150039110-150039418	A549	lung:	n/a	n/a
50	SRF	chr6:150039057-150039392	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:150038868..150039820-chr6:150070353..150070958,2	MCF-7	breast:
2	chr6:149886717..149888905-chr6:150037583..150040474,2	MCF-7	breast:
3	chr6:149864465..149868641-chr6:150037478..150040253,6	MCF-7	breast:
4	chr6:149866797..149869221-chr6:150037385..150040762,4	K562	blood:
5	chr6:149966676..149970226-chr6:150037413..150039390,4	MCF-7	breast:
6	chr6:149969487..149971965-chr6:150038903..150040820,3	K562	blood:
7	chr6:111195402..111196360-chr6:150039114..150039744,2	Hela-S3	cervix:
8	chr6:150037573..150039874-chr7:99755624..99757771,2	MCF-7	breast:
9	chr6:149967309..149971944-chr6:150037502..150040952,6	MCF-7	breast:
10	chr5:172197749..172198455-chr6:150038887..150039868,2	Hela-S3	cervix:
11	chr6:150036817..150045008-chr6:150066563..150073628,17	MCF-7	breast:
12	chr6:150037658..150040820-chr6:150066171..150069234,4	MCF-7	breast:
13	chr6:150022443..150028756-chr6:150036776..150040441,8	MCF-7	breast:
14	chr6:149887426..149891060-chr6:150037726..150040656,4	K562	blood:
15	chr6:149884840..149889202-chr6:150038504..150040931,4	K562	blood:
16	chr2:203130186..203130898-chr6:150038939..150039540,2	Hela-S3	cervix:
17	chr6:149967293..149971613-chr6:150037790..150041524,8	K562	blood:
18	chr6:26103926..26104502-chr6:150038578..150039176,2	Hela-S3	cervix:
19	chr6:149352728..149354619-chr6:150038400..150040013,2	MCF-7	breast:
20	chr6:150037915..150040218-chr6:150069685..150072655,4	MCF-7	breast:
21	chr6:150038744..150042586-chr6:150067819..150072874,7	K562	blood:

Variant related genes	Relation type
LATS1	TF binding region
ENSG00000120253	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000055044	Chromatin interaction
ENSG00000236591	Chromatin interaction
ENSG00000186625	Chromatin interaction
ENSG00000120129	Chromatin interaction
ENSG00000123505	Chromatin interaction
ENSG00000120265	Chromatin interaction
ENSG00000131023	Chromatin interaction
ENSG00000146826	Chromatin interaction
ENSG00000131013	Chromatin interaction
ENSG00000055211	Chromatin interaction

Extended variants
information (count: 365 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:360)

rs_ID	r²[population]
rs10214845	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10452626	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10457850	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10457851	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10485097	0.81[CHB][hapmap]
rs10747275	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10747276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10782310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10782311	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10782312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10782313	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10782314	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10782315	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10782316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10782317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10782318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1080670	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10872643	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10872644	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10872645	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10872646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10872647	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs10872648	0.93[EUR][1000 genomes]
rs10872649	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10872650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10872651	0.92[EUR][1000 genomes]
rs10872652	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872653	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872656	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs1108889	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs1112729	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1112730	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11155662	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11155668	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11155669	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11155670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11155671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11155672	0.81[EUR][1000 genomes]
rs11155674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11155675	0.93[EUR][1000 genomes]
rs11155676	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11155677	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155679	0.93[EUR][1000 genomes]
rs11155680	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155681	0.83[EUR][1000 genomes]
rs11155682	0.84[EUR][1000 genomes]
rs11155683	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11155685	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11155689	0.96[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs1125	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs1125107	0.87[CHB][hapmap]
rs11968921	0.81[EUR][1000 genomes]
rs12111376	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12174716	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12175504	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12175575	0.89[EUR][1000 genomes]
rs12176034	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12178310	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12179031	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12182220	0.83[EUR][1000 genomes]
rs12183664	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12191643	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12193364	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12195866	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12200670	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12201033	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12203703	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12205092	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12206402	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12210605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12211511	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12213779	0.89[EUR][1000 genomes]
rs12234128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs12523793	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12525871	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12526675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12528279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12529698	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12660304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12662162	0.93[EUR][1000 genomes]
rs12662174	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13215691	0.83[EUR][1000 genomes]
rs1413654	0.96[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1413655	0.96[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs1572229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17672976	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17673294	0.83[EUR][1000 genomes]
rs17745062	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1889473	0.82[EUR][1000 genomes]
rs1934534	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1984111	0.82[EUR][1000 genomes]
rs2064520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2064521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2065663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2065664	0.95[CEU][hapmap];0.80[CHB][hapmap];0.87[JPT][hapmap];0.90[EUR][1000 genomes]
rs2095375	0.96[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs2144207	0.83[EUR][1000 genomes]
rs2151909	0.83[EUR][1000 genomes]
rs2151912	0.82[EUR][1000 genomes]
rs2151913	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs2184369	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2184370	0.87[EUR][1000 genomes]
rs2185352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2275046	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs2297928	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2297930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2297932	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2342764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes]
rs2342765	0.95[CEU][hapmap]
rs2342857	0.83[EUR][1000 genomes]
rs2342858	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs2342860	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2342861	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2880435	0.81[EUR][1000 genomes]
rs2880436	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs34157004	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34337297	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35031906	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35443312	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35763894	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35830138	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35961297	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35967444	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3734295	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3763161	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3763162	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs3763163	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs3777949	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3798761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3805748	0.88[EUR][1000 genomes]
rs3805749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs3805750	0.83[EUR][1000 genomes]
rs3805751	0.83[EUR][1000 genomes]
rs3805752	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3805753	0.96[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs3828700	0.83[EUR][1000 genomes]
rs3924871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4039600	0.91[EUR][1000 genomes]
rs4242279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs4354168	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4380763	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4421206	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4455682	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4552	0.96[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs4642491	0.88[EUR][1000 genomes]
rs4816	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs4869730	0.83[EUR][1000 genomes]
rs4869731	0.96[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs4869750	0.95[CEU][hapmap]
rs4869812	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869923	0.82[EUR][1000 genomes]
rs4869966	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4870015	0.82[EUR][1000 genomes]
rs4870019	0.83[EUR][1000 genomes]
rs4870020	0.83[EUR][1000 genomes]
rs4870048	0.82[EUR][1000 genomes]
rs4870049	0.87[EUR][1000 genomes]
rs4870050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs4870052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs4870054	0.95[CEU][hapmap]
rs4870139	0.91[EUR][1000 genomes]
rs4870144	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4870267	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4870388	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4870493	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4870529	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4897137	0.81[CHB][hapmap]
rs4897138	0.81[CHB][hapmap]
rs55763431	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55849538	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55938765	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55993747	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56091542	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56103941	0.87[EUR][1000 genomes]
rs56374774	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56397000	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57938011	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58189451	0.89[EUR][1000 genomes]
rs60424881	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62439811	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62439836	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62439837	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62439840	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62439842	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62439843	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62441279	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62441284	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62441303	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62441335	0.83[EUR][1000 genomes]
rs6420132	0.82[EUR][1000 genomes]
rs66516768	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6899661	0.83[EUR][1000 genomes]
rs6903998	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs6913486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6914319	0.83[EUR][1000 genomes]
rs6936395	0.83[EUR][1000 genomes]
rs7381555	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7450246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7738696	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs7740278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7740784	0.87[EUR][1000 genomes]
rs7744015	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7744105	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs7745915	0.82[EUR][1000 genomes]
rs7752089	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs7752594	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7753812	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7754399	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7764846	0.83[EUR][1000 genomes]
rs7767622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7769115	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs7818	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs868375	0.96[CEU][hapmap]
rs880245	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs880246	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap]
rs9027	0.85[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs9285521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs9285522	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9285523	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9285524	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9285525	0.82[EUR][1000 genomes]
rs9286597	0.83[EUR][1000 genomes]
rs9322184	0.81[CHB][hapmap]
rs9322188	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9322189	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322190	0.82[EUR][1000 genomes]
rs9322192	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322193	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322194	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9322196	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9322197	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9322198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9322199	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9322204	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322206	0.95[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9322207	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322208	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322210	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322215	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9322217	0.89[EUR][1000 genomes]
rs9322218	0.95[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322219	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322220	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322221	0.89[EUR][1000 genomes]
rs9322223	0.82[EUR][1000 genomes]
rs9322224	0.82[EUR][1000 genomes]
rs933055	0.96[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs9371199	0.87[EUR][1000 genomes]
rs9371201	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs9371486	0.82[EUR][1000 genomes]
rs9372044	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9377224	0.86[CHB][hapmap]
rs9377228	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9377229	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9377230	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9379314	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9379348	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9383546	0.96[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs9383812	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9383844	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393132	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9393175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9397022	0.83[EUR][1000 genomes]
rs9397357	0.96[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs9399692	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9399693	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9404047	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9404048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9406286	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9406345	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9406346	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9478291	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9478848	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs9479094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9479494	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9479808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9479810	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9480009	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9480031	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9485405	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9485408	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9498382	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9498384	0.91[EUR][1000 genomes]
rs9505823	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9505824	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9505826	0.91[EUR][1000 genomes]
rs9505967	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9505972	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9505974	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9505975	0.84[EUR][1000 genomes]
rs9505982	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9505983	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs952165	0.96[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs952166	0.82[EUR][1000 genomes]
rs958953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9688350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9688412	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs9688452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9688517	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9688699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9688750	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9688794	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9688803	0.86[EUR][1000 genomes]
rs9688809	0.87[EUR][1000 genomes]
rs9688858	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9688861	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9688867	0.88[EUR][1000 genomes]
rs9688897	0.85[EUR][1000 genomes]
rs9688902	0.86[EUR][1000 genomes]
rs9688938	0.87[EUR][1000 genomes]
rs9688940	0.87[EUR][1000 genomes]
rs9689025	0.84[EUR][1000 genomes]
rs9689036	0.95[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9689084	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9689242	0.87[EUR][1000 genomes]
rs9689269	0.91[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs9689340	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9689447	0.84[EUR][1000 genomes]
rs9689599	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9689694	0.87[EUR][1000 genomes]
rs9689702	0.94[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9689716	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9689723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9717327	0.90[EUR][1000 genomes]
rs9718079	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9765861	0.84[EUR][1000 genomes]
rs9765929	0.89[EUR][1000 genomes]
rs9765965	0.88[EUR][1000 genomes]
rs9766004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9766037	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9766214	0.88[EUR][1000 genomes]
rs9766444	0.88[EUR][1000 genomes]
rs9766525	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9766562	0.92[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs9766886	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9767077	0.86[EUR][1000 genomes]
rs9767105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9767113	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9767122	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9767123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9767192	0.82[EUR][1000 genomes]
rs9767309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9767554	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9767555	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9767652	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9767713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9767727	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9800580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9800603	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9800614	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9800686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9800736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9800806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9800871	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9968911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs12174349	RP11-350J20.5	cis	lung	GTEx
rs12174349	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs12174349	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs12174349	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs12174349	RAET1G	cis	Thyroid	GTEx
rs12174349	PCMT1	cis	Esophagus Muscularis	GTEx
rs12174349	GINM1	cis	Whole Blood	GTEx
rs12174349	RP11-350J20.9	cis	Esophagus Mucosa	GTEx
rs12174349	NUP43	cis	Whole Blood	GTEx
rs12174349	RP11-350J20.5	cis	Artery Aorta	GTEx
rs12174349	RP11-350J20.5	cis	Thyroid	GTEx
rs12174349	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs12174349	RP11-350J20.5	cis	Nerve Tibial	GTEx
rs12174349	RP11-350J20.5	cis	Artery Tibial	GTEx
rs12174349	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs12174349	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150035400-150040000	Active TSS	GM12878-XiMat	blood
2	chr6:150036800-150040200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:150037000-150039800	Active TSS	NHDF-Ad	bronchial
4	chr6:150037200-150039400	Active TSS	H1 Cell Line	embryonic stem cell
5	chr6:150037200-150039600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:150037200-150040000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:150037200-150040200	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr6:150037200-150040200	Active TSS	Colonic Mucosa	Colon
9	chr6:150037400-150039600	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:150037400-150040000	Active TSS	Esophagus	oesophagus
11	chr6:150037400-150040000	Active TSS	Fetal Intestine Large	intestine
12	chr6:150037400-150040000	Active TSS	Psoas Muscle	Psoas
13	chr6:150037400-150040000	Active TSS	Stomach Mucosa	stomach
14	chr6:150037400-150040000	Active TSS	NHLF	lung
15	chr6:150037600-150039600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:150037600-150039600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:150037600-150039600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:150037600-150039600	Active TSS	HSMMtube	muscle
19	chr6:150037600-150039800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:150037600-150039800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:150037600-150039800	Active TSS	Fetal Muscle Leg	muscle
22	chr6:150037600-150039800	Active TSS	Stomach Smooth Muscle	stomach
23	chr6:150037600-150039800	Active TSS	NHEK	skin
24	chr6:150037600-150040000	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr6:150037600-150040000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:150037600-150040000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:150037600-150040000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:150037600-150040000	Active TSS	Left Ventricle	heart
29	chr6:150037600-150040000	Active TSS	Right Ventricle	heart
30	chr6:150037600-150040000	Active TSS	A549	lung
31	chr6:150037600-150040000	Active TSS	HSMM	muscle
32	chr6:150037600-150040200	Active TSS	Brain Germinal Matrix	brain
33	chr6:150037600-150040200	Active TSS	Fetal Brain Female	brain
34	chr6:150037600-150040200	Active TSS	Hela-S3	cervix
35	chr6:150037600-150040200	Active TSS	HMEC	breast
36	chr6:150037800-150039600	Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr6:150037800-150039600	Active TSS	Muscle Satellite Cultured Cells	--
38	chr6:150037800-150039600	Active TSS	Gastric	stomach
39	chr6:150037800-150039800	Active TSS	ES-I3 Cell Line	embryonic stem cell
40	chr6:150037800-150039800	Active TSS	Fetal Stomach	stomach
41	chr6:150037800-150040000	Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr6:150037800-150040000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:150037800-150040000	Active TSS	Aorta	Aorta
44	chr6:150037800-150040000	Active TSS	Lung	lung
45	chr6:150037800-150040000	Active TSS	Ovary	ovary
46	chr6:150038000-150039400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:150038000-150039400	Active TSS	NH-A	brain
48	chr6:150038000-150039600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:150038000-150039600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:150038000-150039600	Active TSS	Primary monocytes fromperipheralblood	blood

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