Variant report

Variant	rs9767713
Chromosome Location	chr6:149909377-149909378
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149907651..149911432-chr6:149965419..149969520,3	K562	blood:
2	chr6:149908198..149910357-chr6:149912018..149914199,2	K562	blood:

Variant related genes	Relation type
ENSG00000233330	Chromatin interaction

Extended variants
information (count: 254 )
Associated
traits (count: 23 )

rSNPs within LD-proxies of this variant (count:249)

rs_ID	r²[population]
rs10214845	0.91[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs10457851	0.91[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap]
rs10485097	0.81[CHB][hapmap]
rs10747275	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10747276	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs10782310	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10782311	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10782312	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10782313	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10782314	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10782315	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10782316	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10782317	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10782318	0.93[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1080670	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10872643	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10872644	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10872645	0.86[EUR][1000 genomes]
rs10872646	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10872647	0.91[CEU][hapmap];0.80[YRI][hapmap];0.87[EUR][1000 genomes]
rs10872648	0.87[EUR][1000 genomes]
rs10872649	0.88[EUR][1000 genomes]
rs10872650	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs10872651	0.83[EUR][1000 genomes]
rs1112730	0.91[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap]
rs11155662	0.93[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155668	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11155669	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11155670	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11155671	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11155674	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155675	0.87[EUR][1000 genomes]
rs11155676	0.82[EUR][1000 genomes]
rs11155677	0.86[EUR][1000 genomes]
rs11155679	0.86[EUR][1000 genomes]
rs11155680	0.84[EUR][1000 genomes]
rs11155685	0.91[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap]
rs1125	0.91[CEU][hapmap];0.82[LWK][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.90[EUR][1000 genomes]
rs1125107	0.87[CHB][hapmap]
rs12111376	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12174349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12174716	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12175504	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12178310	0.89[EUR][1000 genomes]
rs12183664	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12191643	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12193364	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12195866	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12200670	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12201033	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12203703	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12205092	0.88[EUR][1000 genomes]
rs12206402	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12211511	0.86[EUR][1000 genomes]
rs12234128	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12523793	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12524946	0.81[CHB][hapmap]
rs12526675	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12528279	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12529698	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12660304	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12662162	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12662174	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12665533	0.81[CHB][hapmap]
rs1413654	0.91[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs1474640	0.81[CHB][hapmap]
rs1572229	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs17745062	0.85[EUR][1000 genomes]
rs1934534	0.95[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2064520	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2064521	0.95[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2065663	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs2065664	0.91[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs2144207	0.82[EUR][1000 genomes]
rs2185352	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2297928	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2297930	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2297932	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2341551	0.81[CHB][hapmap]
rs2341768	0.81[CHB][hapmap]
rs2880075	0.81[CHB][hapmap]
rs34157004	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34337297	0.87[EUR][1000 genomes]
rs35031906	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35443312	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35763894	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35830138	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35961297	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35967444	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3734295	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763161	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3777949	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798761	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3805749	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs3924871	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4039600	0.89[EUR][1000 genomes]
rs4354168	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.93[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4380763	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4421206	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4455682	1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4869812	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4869923	0.81[EUR][1000 genomes]
rs4870139	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4870144	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4870267	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870388	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4870493	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4870509	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4870529	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4897137	0.81[CHB][hapmap]
rs4897138	0.81[CHB][hapmap]
rs55849538	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55938765	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55993747	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56091542	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56397000	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57938011	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58189451	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60424881	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62439784	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62439811	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62439836	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62439837	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62439840	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62439842	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62439843	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62441279	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62441284	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66516768	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6913486	0.93[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7381555	0.89[EUR][1000 genomes]
rs7450246	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7740278	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7752594	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7753812	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7754399	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7767622	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9027	0.85[CHB][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs909792	0.81[CHB][hapmap]
rs9285521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9285522	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9285523	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9285524	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9286597	0.82[EUR][1000 genomes]
rs9322184	0.81[CHB][hapmap]
rs9322188	1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322189	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322190	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322192	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322193	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322194	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322196	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322197	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322198	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322199	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322200	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322203	0.83[ASN][1000 genomes]
rs9322204	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322206	0.91[CEU][hapmap];0.80[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322207	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322208	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322209	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9322210	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322214	0.93[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322215	0.86[EUR][1000 genomes]
rs9322217	0.81[EUR][1000 genomes]
rs9322218	0.90[CEU][hapmap];0.81[CHB][hapmap]
rs9322219	0.86[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs9322220	0.81[EUR][1000 genomes]
rs9322221	0.80[EUR][1000 genomes]
rs9372044	0.91[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs9377223	0.81[CHB][hapmap]
rs9377224	0.86[CHB][hapmap]
rs9377228	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9377229	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9377230	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9379314	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9379348	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9383812	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9383844	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393132	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9393175	0.93[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9399689	0.81[CHB][hapmap]
rs9399692	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9399693	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9404047	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9404048	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9406286	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9406345	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9406346	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9478291	0.95[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9479094	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9479494	0.89[EUR][1000 genomes]
rs9479808	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes]
rs9479810	0.91[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs9480009	0.88[EUR][1000 genomes]
rs9480031	0.88[EUR][1000 genomes]
rs9485405	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9485408	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9498368	0.81[CHB][hapmap]
rs9498382	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9498383	0.82[ASN][1000 genomes]
rs9498384	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9505823	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9505824	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9505826	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9505967	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9505972	0.83[EUR][1000 genomes]
rs9505974	0.91[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs9505982	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9505983	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9688350	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9688452	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9688517	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9688699	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9688750	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9688794	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9688858	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9688861	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9689036	0.91[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs9689084	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9689340	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9689599	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9689702	0.94[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9689716	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9689723	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9717327	0.89[EUR][1000 genomes]
rs9718079	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9766004	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9766037	0.95[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9766525	0.81[EUR][1000 genomes]
rs9766886	0.95[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9767105	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9767113	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9767122	0.95[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs9767123	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9767309	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9767554	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9767555	0.93[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.80[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9767652	0.89[EUR][1000 genomes]
rs9767727	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9800580	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9800603	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9800614	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9800686	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9800736	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9800806	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9800871	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9968911	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1791928	chr6:149903597-149913164	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1794633	chr6:149903597-149944908	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:23)

SNP	Gene	Cis/trans	Tissue	Source
rs9767713	LRP11	cis	Skin Sun Exposed Lower leg	GTEx
rs9767713	RP11-350J20.5	cis	Thyroid	GTEx
rs9767713	LATS1	cis	parietal	SCAN
rs9767713	RP11-350J20.5	cis	Artery Tibial	GTEx
rs9767713	PPIL4	cis	parietal	SCAN
rs9767713	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs9767713	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs9767713	LATS1	cis	cerebellum	SCAN
rs9767713	NUP43	cis	Whole Blood	GTEx
rs9767713	LRP11	cis	parietal	SCAN
rs9767713	FAM65A	trans	cerebellum	SCAN
rs9767713	FBXO30	cis	cerebellum	SCAN
rs9767713	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs9767713	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs9767713	LRP11	cis	cerebellum	SCAN
rs9767713	RP11-350J20.9	cis	Esophagus Mucosa	GTEx
rs9767713	RAET1G	cis	Thyroid	GTEx
rs9767713	PPIL4	cis	cerebellum	SCAN
rs9767713	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs9767713	RP11-350J20.5	cis	lung	GTEx
rs9767713	GINM1	cis	Whole Blood	GTEx
rs9767713	RMND1	cis	cerebellum	SCAN
rs9767713	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149888400-149911600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:149888600-149909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:149888600-149912800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:149888600-149922000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:149888800-149914800	Weak transcription	A549	lung
6	chr6:149889000-149928000	Weak transcription	Stomach Mucosa	stomach
7	chr6:149889200-149919600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:149889400-149911800	Weak transcription	Psoas Muscle	Psoas
9	chr6:149889400-149924200	Weak transcription	Fetal Heart	heart
10	chr6:149889600-149914200	Weak transcription	Hela-S3	cervix
11	chr6:149889600-149931400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:149891200-149911200	Weak transcription	Small Intestine	intestine
13	chr6:149893800-149926600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr6:149894200-149920000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:149895600-149923200	Strong transcription	Dnd41	blood
16	chr6:149897200-149909400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:149898400-149919200	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:149898600-149927400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:149898800-149913800	Weak transcription	Right Ventricle	heart
20	chr6:149899200-149915000	Weak transcription	Esophagus	oesophagus
21	chr6:149899200-149929800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:149900200-149926800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:149900400-149910000	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr6:149900400-149923200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:149901000-149909800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:149901000-149910000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:149901000-149913200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:149901000-149919200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:149901000-149920200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:149901000-149923200	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr6:149901000-149923200	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr6:149901200-149909800	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr6:149901200-149909800	Strong transcription	Adipose Nuclei	Adipose
34	chr6:149901200-149910000	Strong transcription	Liver	Liver
35	chr6:149901200-149920000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:149901400-149909400	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr6:149901400-149909600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:149901400-149910200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:149901600-149919800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:149901800-149919400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:149902000-149911400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:149902000-149911400	Weak transcription	Fetal Brain Male	brain
43	chr6:149902000-149912400	Strong transcription	Fetal Intestine Small	intestine
44	chr6:149902200-149915200	Weak transcription	HMEC	breast
45	chr6:149902200-149920200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:149902800-149911600	Weak transcription	NH-A	brain
47	chr6:149902800-149929000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:149903200-149911400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:149903200-149914200	Weak transcription	NHEK	skin
50	chr6:149903200-149915000	Weak transcription	Gastric	stomach

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Variant report

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