Variant report

Variant	rs9285521
Chromosome Location	chr6:149906712-149906713
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149886275..149889014-chr6:149903385..149907051,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000055211	Chromatin interaction

Extended variants
information (count: 247 )
Associated
traits (count: 19 )

rSNPs within LD-proxies of this variant (count:242)

rs_ID	r²[population]
rs10214845	0.91[CEU][hapmap];0.87[CHB][hapmap]
rs10457851	0.91[CEU][hapmap];0.87[CHB][hapmap]
rs10485097	0.81[CHB][hapmap]
rs10747275	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10747276	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs10782310	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10782311	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10782312	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10782313	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10782314	0.87[EUR][1000 genomes]
rs10782315	0.84[EUR][1000 genomes]
rs10782316	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs10782317	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs10782318	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs1080670	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872643	0.89[EUR][1000 genomes]
rs10872644	0.87[EUR][1000 genomes]
rs10872645	0.83[EUR][1000 genomes]
rs10872646	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs10872647	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs10872648	0.84[EUR][1000 genomes]
rs10872649	0.85[EUR][1000 genomes]
rs10872650	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs10872651	0.80[EUR][1000 genomes]
rs1112730	0.91[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs11155662	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11155668	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11155669	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11155670	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11155671	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11155674	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs11155675	0.84[EUR][1000 genomes]
rs11155677	0.84[EUR][1000 genomes]
rs11155679	0.84[EUR][1000 genomes]
rs11155680	0.81[EUR][1000 genomes]
rs11155685	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs1125	0.91[CEU][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs1125107	0.87[CHB][hapmap]
rs12111376	0.87[EUR][1000 genomes]
rs12174349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs12174716	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12175504	0.83[EUR][1000 genomes]
rs12178310	0.86[EUR][1000 genomes]
rs12183664	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12191643	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12193364	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12195866	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs12200670	0.89[EUR][1000 genomes]
rs12201033	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12203703	0.88[EUR][1000 genomes]
rs12205092	0.85[EUR][1000 genomes]
rs12206402	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12211511	0.83[EUR][1000 genomes]
rs12234128	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs12523793	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12524946	0.81[CHB][hapmap]
rs12526675	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs12528279	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs12529698	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12660304	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs12662162	0.89[EUR][1000 genomes]
rs12662174	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12665533	0.81[CHB][hapmap]
rs1413654	0.91[CEU][hapmap];0.87[CHB][hapmap]
rs1474640	0.81[CHB][hapmap]
rs1572229	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs17745062	0.83[EUR][1000 genomes]
rs1934534	0.95[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs2064520	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2064521	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.95[MEX][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2065663	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs2065664	0.91[CEU][hapmap];0.80[CHB][hapmap];0.91[TSI][hapmap]
rs2144207	0.82[EUR][1000 genomes]
rs2185352	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs2297928	0.88[EUR][1000 genomes]
rs2297930	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs2297932	0.88[EUR][1000 genomes]
rs2341551	0.81[CHB][hapmap]
rs2341768	0.81[CHB][hapmap]
rs2880075	0.81[CHB][hapmap]
rs34157004	0.88[EUR][1000 genomes]
rs34337297	0.84[EUR][1000 genomes]
rs35031906	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs35443312	0.85[EUR][1000 genomes]
rs35763894	0.86[EUR][1000 genomes]
rs35830138	0.88[EUR][1000 genomes]
rs35961297	0.88[EUR][1000 genomes]
rs35967444	0.88[EUR][1000 genomes]
rs3734295	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3763161	0.85[EUR][1000 genomes]
rs3777949	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3798761	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs3805749	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs3924871	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs4039600	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4354168	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs4380763	0.88[EUR][1000 genomes]
rs4421206	1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs4455682	1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs4869812	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4869923	0.81[EUR][1000 genomes]
rs4870139	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4870144	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4870267	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4870388	0.88[EUR][1000 genomes]
rs4870493	0.89[EUR][1000 genomes]
rs4870509	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs4870529	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs4897137	0.81[CHB][hapmap]
rs4897138	0.81[CHB][hapmap]
rs55849538	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55938765	0.85[EUR][1000 genomes]
rs55993747	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56091542	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56397000	0.87[EUR][1000 genomes]
rs57938011	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58189451	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60424881	0.87[EUR][1000 genomes]
rs62439784	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62439811	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62439836	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62439837	0.88[EUR][1000 genomes]
rs62439840	0.88[EUR][1000 genomes]
rs62439842	0.88[EUR][1000 genomes]
rs62439843	0.85[EUR][1000 genomes]
rs62441279	0.88[EUR][1000 genomes]
rs62441284	0.85[EUR][1000 genomes]
rs66516768	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6913486	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs7381555	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7450246	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs7740278	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7752594	0.87[EUR][1000 genomes]
rs7753812	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs7754399	0.88[EUR][1000 genomes]
rs7767622	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs9027	0.85[CHB][hapmap];0.91[EUR][1000 genomes]
rs909792	0.81[CHB][hapmap]
rs9285522	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9285523	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9285524	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs9286597	0.82[EUR][1000 genomes]
rs9322184	0.81[CHB][hapmap]
rs9322188	1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9322189	0.91[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322190	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9322192	0.91[EUR][1000 genomes]
rs9322193	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs9322194	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9322196	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322197	0.90[EUR][1000 genomes]
rs9322198	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322199	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9322200	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322204	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9322206	0.91[CEU][hapmap];0.80[CHB][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs9322207	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9322208	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9322209	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs9322210	0.89[EUR][1000 genomes]
rs9322214	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs9322215	0.83[EUR][1000 genomes]
rs9322218	0.90[CEU][hapmap];0.81[CHB][hapmap]
rs9322219	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs9372044	0.91[CEU][hapmap];0.87[CHB][hapmap]
rs9377223	0.81[CHB][hapmap]
rs9377224	0.86[CHB][hapmap]
rs9377228	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9377229	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs9377230	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9379314	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9379348	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9383812	0.89[EUR][1000 genomes]
rs9383844	0.88[EUR][1000 genomes]
rs9393132	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9393175	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs9399689	0.81[CHB][hapmap]
rs9399692	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9399693	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9404047	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9404048	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9406286	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9406345	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9406346	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9478291	0.95[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs9479094	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs9479494	0.87[EUR][1000 genomes]
rs9479808	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs9479810	0.91[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs9480009	0.85[EUR][1000 genomes]
rs9480031	0.85[EUR][1000 genomes]
rs9485405	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9485408	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9498368	0.81[CHB][hapmap]
rs9498382	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9498384	0.95[EUR][1000 genomes]
rs9505823	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9505824	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9505826	0.88[EUR][1000 genomes]
rs9505967	0.89[EUR][1000 genomes]
rs9505972	0.80[EUR][1000 genomes]
rs9505974	0.91[CEU][hapmap];0.87[CHB][hapmap]
rs9505982	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9505983	0.86[EUR][1000 genomes]
rs9688350	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs9688452	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9688517	0.87[EUR][1000 genomes]
rs9688699	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs9688750	0.85[EUR][1000 genomes]
rs9688794	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688858	0.88[EUR][1000 genomes]
rs9688861	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9689036	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs9689084	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9689340	0.87[EUR][1000 genomes]
rs9689599	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9689702	0.94[CHB][hapmap];0.87[EUR][1000 genomes]
rs9689716	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9689723	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9717327	0.86[EUR][1000 genomes]
rs9718079	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9766004	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs9766037	0.95[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9766886	0.95[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9767105	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9767113	0.88[EUR][1000 genomes]
rs9767122	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs9767123	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9767309	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs9767554	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9767555	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9767652	0.87[EUR][1000 genomes]
rs9767713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9767727	0.88[EUR][1000 genomes]
rs9800580	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9800603	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9800614	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9800686	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9800736	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9800806	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs9800871	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9968911	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1791928	chr6:149903597-149913164	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1794633	chr6:149903597-149944908	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:19)

SNP	Gene	Cis/trans	Tissue	Source
rs9285521	PPIL4	cis	parietal	SCAN
rs9285521	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs9285521	LRP11	cis	cerebellum	SCAN
rs9285521	RP11-350J20.5	cis	Artery Tibial	GTEx
rs9285521	RP11-350J20.5	cis	lung	GTEx
rs9285521	FBXO30	cis	cerebellum	SCAN
rs9285521	RMND1	cis	cerebellum	SCAN
rs9285521	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs9285521	LRP11	cis	parietal	SCAN
rs9285521	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs9285521	RAET1G	cis	Thyroid	GTEx
rs9285521	GINM1	cis	Whole Blood	GTEx
rs9285521	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs9285521	RP11-350J20.5	cis	Thyroid	GTEx
rs9285521	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs9285521	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs9285521	PPIL4	cis	cerebellum	SCAN
rs9285521	LATS1	cis	parietal	SCAN
rs9285521	LATS1	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149888400-149911600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:149888600-149907600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:149888600-149909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:149888600-149912800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:149888600-149922000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:149888800-149914800	Weak transcription	A549	lung
7	chr6:149889000-149908400	Weak transcription	Pancreas	Pancrea
8	chr6:149889000-149928000	Weak transcription	Stomach Mucosa	stomach
9	chr6:149889200-149919600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:149889400-149911800	Weak transcription	Psoas Muscle	Psoas
11	chr6:149889400-149924200	Weak transcription	Fetal Heart	heart
12	chr6:149889600-149914200	Weak transcription	Hela-S3	cervix
13	chr6:149889600-149931400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:149891200-149911200	Weak transcription	Small Intestine	intestine
15	chr6:149893800-149926600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr6:149894200-149920000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:149895600-149923200	Strong transcription	Dnd41	blood
18	chr6:149897200-149909400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:149897400-149909000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:149897600-149906800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:149897600-149908000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:149898400-149919200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:149898600-149908400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:149898600-149908400	Weak transcription	Spleen	Spleen
25	chr6:149898600-149927400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:149898800-149907200	Weak transcription	Thymus	Thymus
27	chr6:149898800-149913800	Weak transcription	Right Ventricle	heart
28	chr6:149899200-149915000	Weak transcription	Esophagus	oesophagus
29	chr6:149899200-149929800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:149899400-149907400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:149900200-149926800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:149900400-149910000	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr6:149900400-149923200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:149901000-149909800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:149901000-149910000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:149901000-149913200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:149901000-149919200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:149901000-149920200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:149901000-149923200	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr6:149901000-149923200	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr6:149901200-149909800	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:149901200-149909800	Strong transcription	Adipose Nuclei	Adipose
43	chr6:149901200-149910000	Strong transcription	Liver	Liver
44	chr6:149901200-149920000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:149901400-149909400	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:149901400-149909600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr6:149901400-149910200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:149901600-149908400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:149901600-149909200	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:149901600-149919800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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