Variant report

Variant	rs9322193
Chromosome Location	chr6:149919143-149919144
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149911768..149915341-chr6:149918600..149921005,3	K562	blood:

Variant related genes	Relation type
ENSG00000220848	Chromatin interaction
ENSG00000233330	Chromatin interaction

Extended variants
information (count: 270 )
Associated
traits (count: 22 )

rSNPs within LD-proxies of this variant (count:265)

rs_ID	r²[population]
rs10214845	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs10452626	0.84[EUR][1000 genomes]
rs10457850	0.84[EUR][1000 genomes]
rs10457851	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[EUR][1000 genomes]
rs10747275	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10747276	0.91[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs10782310	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10782311	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10782312	0.90[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10782313	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10782314	0.87[EUR][1000 genomes]
rs10782315	0.85[EUR][1000 genomes]
rs10782316	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs10782317	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs10782318	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs1080670	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10872643	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10872644	0.87[EUR][1000 genomes]
rs10872645	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10872646	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs10872647	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs10872648	0.84[EUR][1000 genomes]
rs10872649	0.86[EUR][1000 genomes]
rs10872650	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs10872651	0.81[EUR][1000 genomes]
rs10872652	0.84[EUR][1000 genomes]
rs10872653	0.81[EUR][1000 genomes]
rs1112729	0.84[EUR][1000 genomes]
rs1112730	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs11155662	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11155668	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11155669	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11155670	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11155671	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11155674	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11155675	0.84[EUR][1000 genomes]
rs11155676	0.80[EUR][1000 genomes]
rs11155677	0.84[EUR][1000 genomes]
rs11155679	0.83[EUR][1000 genomes]
rs11155680	0.81[EUR][1000 genomes]
rs11155682	0.80[EUR][1000 genomes]
rs11155683	0.82[EUR][1000 genomes]
rs11155685	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs1125	0.86[CEU][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs12111376	0.87[EUR][1000 genomes]
rs12174349	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12174716	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12175504	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12175575	0.83[EUR][1000 genomes]
rs12178310	0.87[EUR][1000 genomes]
rs12179031	0.82[EUR][1000 genomes]
rs12183664	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12191643	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12193364	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12195866	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12200670	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12201033	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12203703	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12205092	0.86[EUR][1000 genomes]
rs12206402	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12211511	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12213779	0.84[EUR][1000 genomes]
rs12234128	0.91[CEU][hapmap];0.87[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12523793	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12525871	0.84[EUR][1000 genomes]
rs12526675	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs12528279	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs12529698	0.87[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12660304	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs12662162	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12662174	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1413654	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs1572229	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs17672976	0.84[EUR][1000 genomes]
rs17745062	0.83[EUR][1000 genomes]
rs1934534	0.91[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2064520	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2064521	0.91[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2065663	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs2065664	0.95[CEU][hapmap];0.93[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.81[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs2144207	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2184369	0.84[YRI][hapmap];0.83[EUR][1000 genomes]
rs2185352	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2297928	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2297930	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2297932	0.88[EUR][1000 genomes]
rs2342860	0.83[EUR][1000 genomes]
rs2342861	0.83[EUR][1000 genomes]
rs34157004	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34337297	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35031906	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35443312	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35763894	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35830138	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35961297	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35967444	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3734295	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3763161	0.85[EUR][1000 genomes]
rs3777949	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3798761	0.91[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3805748	0.83[EUR][1000 genomes]
rs3805749	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs3805753	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3924871	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4039600	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4354168	0.87[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4380763	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4421206	0.85[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4455682	0.86[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4642491	0.83[EUR][1000 genomes]
rs4816	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs4869812	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4869923	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4869966	0.84[EUR][1000 genomes]
rs4870139	0.92[EUR][1000 genomes]
rs4870144	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4870267	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4870388	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4870493	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4870509	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4870529	0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55763431	0.83[EUR][1000 genomes]
rs55849538	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55938765	0.86[EUR][1000 genomes]
rs55993747	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56091542	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56374774	0.83[EUR][1000 genomes]
rs56397000	0.87[EUR][1000 genomes]
rs57938011	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58189451	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60424881	0.87[EUR][1000 genomes]
rs62439784	0.82[EUR][1000 genomes]
rs62439811	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62439836	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62439837	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62439840	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62439842	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62439843	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62441279	0.88[EUR][1000 genomes]
rs62441284	0.86[EUR][1000 genomes]
rs62441303	0.84[EUR][1000 genomes]
rs66516768	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6913486	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7381555	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7450246	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7740278	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7744015	0.83[EUR][1000 genomes]
rs7752594	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7753812	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7754399	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7767622	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9027	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9285521	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs9285522	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9285523	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9285524	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9286597	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9322188	0.86[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322189	0.87[CEU][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322190	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322192	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322194	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322196	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322197	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322198	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322199	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9322200	0.91[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322204	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322206	1.00[ASW][hapmap];0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9322207	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322208	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322209	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322210	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9322214	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322215	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322218	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes]
rs9322219	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs9322220	0.81[EUR][1000 genomes]
rs9322221	0.80[EUR][1000 genomes]
rs9372044	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs9377228	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9377229	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9377230	0.91[CEU][hapmap];0.87[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9379314	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9379348	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9383812	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9383844	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393132	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9393175	0.91[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399692	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9399693	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9404047	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9404048	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9406286	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9406345	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9406346	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9478291	0.91[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs9479094	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs9479494	0.87[EUR][1000 genomes]
rs9479808	0.91[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap]
rs9479810	0.90[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9480009	0.86[EUR][1000 genomes]
rs9480031	0.86[EUR][1000 genomes]
rs9485405	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9485408	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9498382	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9498384	0.96[EUR][1000 genomes]
rs9505823	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9505824	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9505826	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9505967	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9505972	0.81[EUR][1000 genomes]
rs9505974	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs9505975	0.80[EUR][1000 genomes]
rs9505982	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9505983	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9688350	0.91[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs9688452	0.91[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9688517	0.87[EUR][1000 genomes]
rs9688699	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes]
rs9688750	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9688794	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9688858	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9688861	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9688867	0.83[EUR][1000 genomes]
rs9689036	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs9689084	0.82[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9689269	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.90[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs9689340	0.87[EUR][1000 genomes]
rs9689599	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9689694	0.82[EUR][1000 genomes]
rs9689702	0.81[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs9689716	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9689723	0.91[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9717327	0.86[EUR][1000 genomes]
rs9718079	0.87[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.83[JPT][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9765861	0.82[EUR][1000 genomes]
rs9765929	0.84[EUR][1000 genomes]
rs9765965	0.83[EUR][1000 genomes]
rs9766004	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs9766037	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.88[JPT][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9766214	0.83[EUR][1000 genomes]
rs9766444	0.83[EUR][1000 genomes]
rs9766525	0.81[EUR][1000 genomes]
rs9766562	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9766886	0.91[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9767105	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9767113	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9767122	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs9767123	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9767309	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9767554	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9767555	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9767652	0.87[EUR][1000 genomes]
rs9767713	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9767727	0.88[EUR][1000 genomes]
rs9791197	0.80[MEX][hapmap]
rs9800580	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9800603	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9800614	0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9800686	0.90[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9800736	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9800806	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs9800871	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9968911	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1794633	chr6:149903597-149944908	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:22)

SNP	Gene	Cis/trans	Tissue	Source
rs9322193	RP11-350J20.5	cis	Artery Tibial	GTEx
rs9322193	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs9322193	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs9322193	LATS1	cis	cerebellum	SCAN
rs9322193	PPIL4	cis	parietal	SCAN
rs9322193	GINM1	cis	Nerve Tibial	GTEx
rs9322193	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs9322193	RP11-350J20.5	cis	lung	GTEx
rs9322193	LRP11	cis	parietal	SCAN
rs9322193	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs9322193	RP11-350J20.5	cis	Thyroid	GTEx
rs9322193	GINM1	cis	Whole Blood	GTEx
rs9322193	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs9322193	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs9322193	RP11-350J20.5	cis	Nerve Tibial	GTEx
rs9322193	LATS1	cis	parietal	SCAN
rs9322193	FAM65A	trans	cerebellum	SCAN
rs9322193	RP11-350J20.5	cis	Stomach	GTEx
rs9322193	PPIL4	cis	cerebellum	SCAN
rs9322193	LRP11	cis	cerebellum	SCAN
rs9322193	RP11-350J20.5	cis	Artery Aorta	GTEx
rs9322193	NUP43	cis	Whole Blood	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149888600-149922000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:149889000-149928000	Weak transcription	Stomach Mucosa	stomach
3	chr6:149889200-149919600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:149889400-149924200	Weak transcription	Fetal Heart	heart
5	chr6:149889600-149931400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:149893800-149926600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr6:149894200-149920000	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:149895600-149923200	Strong transcription	Dnd41	blood
9	chr6:149898400-149919200	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:149898600-149927400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:149899200-149929800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:149900200-149926800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:149900400-149923200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:149901000-149919200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:149901000-149920200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:149901000-149923200	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr6:149901000-149923200	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr6:149901200-149920000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:149901600-149919800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:149901800-149919400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:149902200-149920200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:149902800-149929000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:149903800-149924200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:149905200-149926200	Strong transcription	Fetal Stomach	stomach
25	chr6:149905400-149919400	Strong transcription	Left Ventricle	heart
26	chr6:149905400-149920000	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:149906800-149922800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:149907000-149919600	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:149907000-149925800	Strong transcription	Fetal Thymus	thymus
30	chr6:149907600-149925800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:149909000-149935000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:149910000-149935200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:149910600-149919400	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:149910800-149919400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:149910800-149919400	Strong transcription	Osteobl	bone
36	chr6:149910800-149920000	Strong transcription	Duodenum Mucosa	Duodenum
37	chr6:149910800-149920800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:149910800-149926000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:149911000-149919400	Strong transcription	Placenta	Placenta
40	chr6:149911200-149925800	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr6:149911400-149919200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:149911400-149919400	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr6:149911400-149920000	Strong transcription	Adipose Nuclei	Adipose
44	chr6:149911400-149920000	Strong transcription	Fetal Muscle Trunk	muscle
45	chr6:149911400-149920600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:149911400-149920600	Strong transcription	K562	blood
47	chr6:149911400-149925200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:149911400-149927400	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr6:149912800-149925800	Strong transcription	Fetal Muscle Leg	muscle
50	chr6:149913200-149924400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links