Variant report

Variant	rs10872646
Chromosome Location	chr6:150067675-150067676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:477)
CpG islands
(count:122)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:477 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:150067409-150068028	H1-neurons	neurons:	n/a	n/a
2	MAX	chr6:150067162-150068078	HCT-116	colon:	n/a	n/a
3	CTCF	chr6:150067274-150067900	K562	blood:	n/a	n/a
4	POLR2A	chr6:150067242-150067986	U87	brain:	n/a	n/a
5	POLR2A	chr6:150067420-150067899	GM12878	blood:	n/a	n/a
6	EGR1	chr6:150067553-150067867	K562	blood:	n/a	n/a
7	POLR2A	chr6:150067403-150068008	K562	blood:	n/a	n/a
8	CTCF	chr6:150067449-150067859	K562	blood:	n/a	n/a
9	POLR2A	chr6:150067452-150067880	HUVEC	blood vessel:	n/a	n/a
10	MAFK	chr6:150067414-150068047	HepG2	liver:	n/a	n/a
11	TAF1	chr6:150067389-150067970	PFSK-1	brain:	n/a	n/a
12	ZNF143	chr6:150067458-150067970	GM12878	blood:	n/a	n/a
13	CTCF	chr6:150067660-150067810	A549	lung:	n/a	n/a
14	POLR2A	chr6:150067378-150067966	HepG2	liver:	n/a	n/a
15	CREB1	chr6:150067502-150067903	H1-hESC	embryonic stem cell:	n/a	n/a
16	PAX5	chr6:150067228-150067944	GM12878	blood:	n/a	n/a
17	RAD21	chr6:150067525-150067720	K562	blood:	n/a	n/a
18	POLR2A	chr6:150067356-150067875	GM12878	blood:	n/a	n/a
19	POLR2A	chr6:150067322-150068072	K562	blood:	n/a	n/a
20	ATF2	chr6:150067401-150067869	H1-hESC	embryonic stem cell:	n/a	n/a
21	TAF1	chr6:150067426-150067961	SK-N-SH	brain:	n/a	n/a
22	SIX5	chr6:150067523-150067908	A549	lung:	n/a	n/a
23	HCFC1	chr6:150067227-150068314	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr6:150067422-150067949	U87	brain:	n/a	n/a
25	CTCF	chr6:150067517-150067738	GM19240	blood:	n/a	n/a
26	GTF2F1	chr6:150067277-150067943	H1-hESC	embryonic stem cell:	n/a	n/a
27	NR3C1	chr6:150067556-150068000	A549	lung:	n/a	n/a
28	GABPA	chr6:150067440-150068044	SK-N-SH	brain:	n/a	n/a
29	CHD2	chr6:150067383-150067944	Hela-S3	cervix:	n/a	n/a
30	YY1	chr6:150067232-150067938	GM12878	blood:	n/a	n/a
31	CTCF	chr6:150067540-150067690	GM12867	blood:	n/a	n/a
32	POLR2A	chr6:150067429-150067939	HCT-116	colon:	n/a	n/a
33	POLR2A	chr6:150067398-150067969	GM12891	blood:	n/a	n/a
34	CTCF	chr6:150067560-150067710	HMF	breast:	n/a	n/a
35	SMC3	chr6:150067518-150067903	Hela-S3	cervix:	n/a	n/a
36	FOXA2	chr6:150067490-150067903	A549	lung:	n/a	n/a
37	CTCF	chr6:150067560-150067710	BJ	skin:	n/a	n/a
38	SIN3AK20	chr6:150067202-150068111	HCT-116	colon:	n/a	n/a
39	CTCF	chr6:150067664-150067685	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr6:150067258-150068228	HepG2	liver:	n/a	n/a
41	YY1	chr6:150067254-150067906	GM12878	blood:	n/a	n/a
42	MYC	chr6:150067515-150067799	MCF10A-Er-Src	breast:	n/a	n/a
43	CHD1	chr6:150067270-150067822	H1-hESC	embryonic stem cell:	n/a	n/a
44	ELF1	chr6:150067231-150067912	GM12878	blood:	n/a	n/a
45	POLR2A	chr6:150067298-150068128	K562	blood:	n/a	n/a
46	CTCF	chr6:150067600-150067750	AoAF	blood vessel:	n/a	n/a
47	POLR2A	chr6:150067374-150067982	PANC-1	pancreas:	n/a	n/a
48	CTCF	chr6:150067580-150067730	RPTEC	kidney:	n/a	n/a
49	CTCF	chr6:150067540-150067690	NHLF	lung:	n/a	n/a
50	POLR2A	chr6:150067319-150067982	Hela-S3	cervix:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:150067644-150067694	HPAEpiC	pulmonary alveolar:	n/a
2	chr6:150067644-150067694	HCF	heart:	n/a
3	chr6:150067640-150067690	HIPEpiC	eye:	n/a
4	chr6:150067640-150067690	HCPEpiC	choroid plexus:	n/a
5	chr6:150067644-150067694	HMEC	breast:	n/a
6	chr6:150067640-150067690	NB4	blood:	n/a
7	chr6:150067644-150067694	NHDF-neo	bronchial:	n/a
8	chr6:150067644-150067694	BE2_C	brain:	n/a
9	chr6:150067640-150067690	HNPCEpiC	eye:	n/a
10	chr6:150067640-150067690	NHDF-neo	bronchial:	n/a
11	chr6:150067644-150067694	GM19239	blood:	n/a
12	chr6:150067640-150067690	HepG2	liver:	n/a
13	chr6:150067640-150067690	BJ	skin:	n/a
14	chr6:150067640-150067690	HPAEpiC	pulmonary alveolar:	n/a
15	chr6:150067644-150067694	SK-N-MC	brain:	n/a
16	chr6:150067644-150067694	NT2-D1	testis:	n/a
17	chr6:150067640-150067690	GM06990	blood:	n/a
18	chr6:150067644-150067694	NB4	blood:	n/a
19	chr6:150067640-150067690	HCF	heart:	n/a
20	chr6:150067640-150067690	SK-N-SH	brain:	n/a
21	chr6:150067644-150067694	AG09319	gingival:	n/a
22	chr6:150067640-150067690	Hepatocyte	liver:	n/a
23	chr6:150067644-150067694	GM12891	blood:	n/a
24	chr6:150067644-150067694	HIPEpiC	eye:	n/a
25	chr6:150067640-150067690	AG09319	gingival:	n/a
26	chr6:150067640-150067690	HEEpiC	esophagus:	n/a
27	chr6:150067644-150067694	U87	brain:	n/a
28	chr6:150067640-150067690	Jurkat	blood:	n/a
29	chr6:150067640-150067690	NHBE	bronchial:	n/a
30	chr6:150067644-150067694	SKMC	muscle:	n/a
31	chr6:150067644-150067694	AG09309	skin:	n/a
32	chr6:150067644-150067694	Caco-2	colon:	n/a
33	chr6:150067644-150067694	HepG2	liver:	n/a
34	chr6:150067644-150067694	HEK293	kidney:	embryo
35	chr6:150067644-150067694	MCF-7	breast:	n/a
36	chr6:150067644-150067694	GM12892	blood:	n/a
37	chr6:150067640-150067690	LNCaP	prostate:	n/a
38	chr6:150067644-150067694	AG04450	lung:	fetal
39	chr6:150067640-150067690	PANC-1	pancreas:	n/a
40	chr6:150067644-150067694	AoSMC	blood vessel:	n/a
41	chr6:150067640-150067690	A549	lung:	n/a
42	chr6:150067640-150067690	HRCEpiC	kidney:	n/a
43	chr6:150067644-150067694	HCM	heart:	n/a
44	chr6:150067640-150067690	NH-A	brain:	n/a
45	chr6:150067640-150067690	AoSMC	blood vessel:	n/a
46	chr6:150067644-150067694	LNCaP	prostate:	n/a
47	chr6:150067640-150067690	PFSK-1	brain:	n/a
48	chr6:150067640-150067690	RPTEC	kidney:	n/a
49	chr6:150067644-150067694	A549	lung:	n/a
50	chr6:150067640-150067690	HEK293	kidney:	embryo

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150037658..150040820-chr6:150066171..150069234,4	MCF-7	breast:
2	chr6:149865412..149868638-chr6:150066732..150070347,4	K562	blood:
3	chr6:149967496..149969831-chr6:150066064..150067785,2	K562	blood:
4	chr6:150065257..150067789-chr6:150184620..150186500,2	K562	blood:
5	chr6:150036817..150045008-chr6:150066563..150073628,17	MCF-7	breast:
6	chr6:149864573..149867229-chr6:150066856..150070071,3	K562	blood:

No data

Variant related genes	Relation type
PCMT1	TF binding region
NUP43	TF binding region
NUP43	CpG island
PCMT1	CpG island
ENSG00000268592	Chromatin interaction
ENSG00000131023	Chromatin interaction
ENSG00000131013	Chromatin interaction
ENSG00000186625	Chromatin interaction
ENSG00000120256	Chromatin interaction

Extended variants
information (count: 358 )
Associated
traits (count: 25 )

rSNPs within LD-proxies of this variant (count:353)

rs_ID	r²[population]
rs10214845	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10452626	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10457850	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10457851	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10747275	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10747276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10782310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782311	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782313	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782314	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782315	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782316	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782317	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080670	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10872643	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10872644	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872645	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10872647	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs10872648	0.95[EUR][1000 genomes]
rs10872649	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10872650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10872651	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10872652	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10872653	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10872656	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs1108889	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[TSI][hapmap]
rs1112729	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1112730	0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11155662	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11155668	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11155669	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11155670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11155671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11155674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11155675	0.93[EUR][1000 genomes]
rs11155676	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11155677	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11155679	0.95[EUR][1000 genomes]
rs11155680	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11155681	0.85[EUR][1000 genomes]
rs11155682	0.86[EUR][1000 genomes]
rs11155683	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11155685	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11155689	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs1125	0.95[CEU][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs11968921	0.83[EUR][1000 genomes]
rs12111376	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12174349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12174716	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12175504	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12175575	0.91[EUR][1000 genomes]
rs12176034	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs12178310	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12179031	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12182220	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12183664	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12191643	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12193364	0.87[EUR][1000 genomes]
rs12195866	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12200670	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12201033	0.91[EUR][1000 genomes]
rs12203703	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12205092	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12206402	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12210605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12211511	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12213779	0.91[EUR][1000 genomes]
rs12234128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs12523793	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12525871	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12526675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528279	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529698	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12660304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662162	0.90[EUR][1000 genomes]
rs12662174	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13215691	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1413654	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1413655	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs1572229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs17672976	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17673294	0.85[EUR][1000 genomes]
rs17745062	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1889473	0.84[EUR][1000 genomes]
rs1934534	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1984111	0.84[EUR][1000 genomes]
rs2064520	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2064521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2065663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2065664	0.95[CEU][hapmap];0.80[CHB][hapmap];0.88[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2095375	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs2144207	0.81[EUR][1000 genomes]
rs2151909	0.85[EUR][1000 genomes]
rs2151912	0.84[EUR][1000 genomes]
rs2151913	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs2184369	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2184370	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2185352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2275045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2275046	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs2297928	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2297930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2297932	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2342764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs2342765	0.95[CEU][hapmap];0.89[TSI][hapmap]
rs2342857	0.86[EUR][1000 genomes]
rs2342858	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs2342860	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2342861	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2880435	0.83[EUR][1000 genomes]
rs2880436	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs34157004	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34337297	0.92[EUR][1000 genomes]
rs35031906	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35443312	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35763894	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35830138	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35961297	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35967444	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3734295	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3763161	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763162	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs3763163	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs3777949	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3798761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3805748	0.90[EUR][1000 genomes]
rs3805749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3805750	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3805751	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3805752	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3805753	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3828700	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3924871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4039600	0.89[EUR][1000 genomes]
rs4242279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4354168	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4380763	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4421206	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4455682	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4552	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs4642491	0.90[EUR][1000 genomes]
rs4816	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4869730	0.86[EUR][1000 genomes]
rs4869731	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs4869750	0.95[CEU][hapmap];0.89[TSI][hapmap]
rs4869812	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4869923	0.80[EUR][1000 genomes]
rs4869966	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4870015	0.84[EUR][1000 genomes]
rs4870019	0.85[EUR][1000 genomes]
rs4870020	0.85[EUR][1000 genomes]
rs4870048	0.84[EUR][1000 genomes]
rs4870049	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4870050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4870052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs4870054	0.95[CEU][hapmap];0.91[TSI][hapmap]
rs4870139	0.89[EUR][1000 genomes]
rs4870144	0.90[EUR][1000 genomes]
rs4870267	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4870388	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870493	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4870509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4870529	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55763431	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55849538	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55938765	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55993747	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56091542	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56103941	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56374774	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56397000	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57938011	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58189451	0.87[EUR][1000 genomes]
rs60424881	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62439811	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62439836	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62439837	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62439840	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62439842	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62439843	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62441279	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62441284	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62441303	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62441335	0.86[EUR][1000 genomes]
rs6420132	0.84[EUR][1000 genomes]
rs66516768	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6899661	0.86[EUR][1000 genomes]
rs6903998	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs6913486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6914319	0.86[EUR][1000 genomes]
rs6936395	0.86[EUR][1000 genomes]
rs7381555	0.85[EUR][1000 genomes]
rs7450246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7738696	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs7740278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7740784	0.89[EUR][1000 genomes]
rs7744015	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7744105	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[TSI][hapmap]
rs7745915	0.84[EUR][1000 genomes]
rs7752089	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7752594	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7753812	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7754399	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7764846	0.85[EUR][1000 genomes]
rs7767622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7769115	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[TSI][hapmap]
rs7818	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs868375	0.95[CEU][hapmap]
rs880245	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[TSI][hapmap]
rs880246	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs9027	0.85[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs9285521	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs9285522	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9285523	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9285524	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9285525	0.84[EUR][1000 genomes]
rs9286597	0.81[EUR][1000 genomes]
rs9322188	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs9322189	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs9322190	0.80[EUR][1000 genomes]
rs9322192	0.85[EUR][1000 genomes]
rs9322193	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs9322194	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322196	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322197	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322199	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322204	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322206	0.95[CEU][hapmap];0.80[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322207	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9322208	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9322209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9322210	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322215	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322217	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9322218	0.95[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322219	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322220	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322221	0.91[EUR][1000 genomes]
rs9322223	0.84[EUR][1000 genomes]
rs9322224	0.84[EUR][1000 genomes]
rs933055	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs9371199	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9371201	0.95[CEU][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs9371486	0.84[EUR][1000 genomes]
rs9372044	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9377228	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9377229	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9377230	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9379314	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9379348	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9383546	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs9383812	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9383844	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9393132	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9393175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9397022	0.86[EUR][1000 genomes]
rs9397357	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs9399692	0.84[EUR][1000 genomes]
rs9399693	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9404047	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9404048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9406286	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9406345	0.91[EUR][1000 genomes]
rs9406346	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9478291	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.99[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9478848	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs9479094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479494	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9479808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9479810	0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480009	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9480031	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9485405	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9485408	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9498382	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9498384	0.89[EUR][1000 genomes]
rs9505823	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9505824	0.93[EUR][1000 genomes]
rs9505826	0.89[EUR][1000 genomes]
rs9505967	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9505972	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9505974	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9505975	0.86[EUR][1000 genomes]
rs9505982	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9505983	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs952165	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs952166	0.84[EUR][1000 genomes]
rs958953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9688350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688412	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs9688452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9688517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688750	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9688794	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9688803	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688809	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688858	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9688861	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9688867	0.90[EUR][1000 genomes]
rs9688897	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688902	0.88[EUR][1000 genomes]
rs9688938	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688940	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9689025	0.86[EUR][1000 genomes]
rs9689036	0.95[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9689084	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9689242	0.89[EUR][1000 genomes]
rs9689269	0.91[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9689340	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689447	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9689599	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9689694	0.89[EUR][1000 genomes]
rs9689702	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689716	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9689723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9717327	0.88[EUR][1000 genomes]
rs9718079	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9765861	0.86[EUR][1000 genomes]
rs9765929	0.91[EUR][1000 genomes]
rs9765965	0.90[EUR][1000 genomes]
rs9766004	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9766037	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9766214	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9766444	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9766525	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9766562	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9766886	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9767077	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9767105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9767113	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9767122	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9767123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9767192	0.84[EUR][1000 genomes]
rs9767309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9767554	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9767555	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9767652	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9767713	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9767727	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9800580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9800603	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9800614	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9800686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs9800736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9800806	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9800871	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9968911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:25)

SNP	Gene	Cis/trans	Tissue	Source
rs10872646	PPIL4	cis	cerebellum	SCAN
rs10872646	RAET1G	cis	Thyroid	GTEx
rs10872646	LATS1	cis	cerebellum	SCAN
rs10872646	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs10872646	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs10872646	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs10872646	RP11-350J20.5	cis	Artery Tibial	GTEx
rs10872646	RP11-350J20.5	cis	Artery Aorta	GTEx
rs10872646	RMND1	cis	cerebellum	SCAN
rs10872646	LATS1	cis	parietal	SCAN
rs10872646	LRP11	cis	parietal	SCAN
rs10872646	FBXO30	cis	cerebellum	SCAN
rs10872646	RP11-350J20.9	cis	Esophagus Mucosa	GTEx
rs10872646	GINM1	cis	Whole Blood	GTEx
rs10872646	RAET1G	cis	Artery Tibial	GTEx
rs10872646	NUP43	cis	Whole Blood	GTEx
rs10872646	RP11-350J20.5	cis	lung	GTEx
rs10872646	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs10872646	RP11-350J20.5	cis	Nerve Tibial	GTEx
rs10872646	LRP11	cis	cerebellum	SCAN
rs10872646	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs10872646	PPIL4	cis	parietal	SCAN
rs10872646	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs10872646	RP11-350J20.5	cis	Thyroid	GTEx
rs10872646	PCMT1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150066200-150067800	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr6:150066200-150068000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:150066400-150067800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:150066400-150067800	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr6:150066400-150067800	Active TSS	Hela-S3	cervix
6	chr6:150066400-150067800	Active TSS	HMEC	breast
7	chr6:150066400-150068000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:150066600-150067800	Active TSS	H1 Cell Line	embryonic stem cell
9	chr6:150066600-150067800	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:150066600-150067800	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr6:150066600-150067800	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr6:150066600-150067800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:150066600-150067800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:150066600-150067800	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr6:150066600-150067800	Active TSS	Fetal Kidney	kidney
16	chr6:150066600-150067800	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr6:150066600-150067800	Active TSS	Right Ventricle	heart
18	chr6:150066600-150067800	Active TSS	A549	lung
19	chr6:150066600-150067800	Active TSS	HSMMtube	muscle
20	chr6:150066600-150067800	Active TSS	NHDF-Ad	bronchial
21	chr6:150066600-150068000	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr6:150066600-150068000	Flanking Active TSS	Primary T cells from cord blood	blood
23	chr6:150066600-150068000	Active TSS	Fetal Brain Female	brain
24	chr6:150066600-150068200	Flanking Active TSS	Liver	Liver
25	chr6:150066600-150068200	Active TSS	NHLF	lung
26	chr6:150066800-150067800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:150066800-150067800	Active TSS	H9 Cell Line	embryonic stem cell
28	chr6:150066800-150067800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:150066800-150067800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:150066800-150067800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:150066800-150067800	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr6:150066800-150067800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:150066800-150067800	Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr6:150066800-150067800	Active TSS	Aorta	Aorta
35	chr6:150066800-150067800	Active TSS	Fetal Intestine Small	intestine
36	chr6:150066800-150067800	Active TSS	Rectal Smooth Muscle	rectum
37	chr6:150066800-150067800	Active TSS	GM12878-XiMat	blood
38	chr6:150066800-150067800	Bivalent/Poised TSS	HepG2	liver
39	chr6:150066800-150067800	Active TSS	HSMM	muscle
40	chr6:150066800-150067800	Active TSS	K562	blood
41	chr6:150066800-150068000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr6:150066800-150068000	Flanking Active TSS	Primary B cells from cord blood	blood
43	chr6:150066800-150068000	Active TSS	Brain Germinal Matrix	brain
44	chr6:150066800-150068000	Active TSS	Colonic Mucosa	Colon
45	chr6:150066800-150068000	Active TSS	Ovary	ovary
46	chr6:150066800-150068000	Active TSS	Psoas Muscle	Psoas
47	chr6:150066800-150068200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr6:150067000-150067800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:150067000-150067800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:150067000-150067800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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