Variant report

Variant	rs62441303
Chromosome Location	chr6:150088683-150088684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150069893..150072811-chr6:150088519..150090991,3	K562	blood:
2	chr6:150069605..150072550-chr6:150088674..150091303,3	MCF-7	breast:
3	chr6:150056189..150058186-chr6:150088562..150090065,2	K562	blood:

Variant related genes	Relation type
ENSG00000120265	Chromatin interaction
ENSG00000120253	Chromatin interaction

Extended variants
information (count: 341 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:339)

rs_ID	r²[population]
rs10214845	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10452626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457850	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457851	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10747275	0.83[EUR][1000 genomes]
rs10747276	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10782310	0.82[EUR][1000 genomes]
rs10782311	0.83[EUR][1000 genomes]
rs10782312	0.83[EUR][1000 genomes]
rs10782313	0.83[EUR][1000 genomes]
rs10782314	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10782315	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10782316	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10782317	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10782318	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1080670	0.83[EUR][1000 genomes]
rs10872643	0.88[EUR][1000 genomes]
rs10872644	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10872645	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10872646	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10872647	0.87[EUR][1000 genomes]
rs10872648	0.87[EUR][1000 genomes]
rs10872649	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10872650	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10872651	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10872652	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872653	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872656	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1108889	0.81[EUR][1000 genomes]
rs1112729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155668	0.83[EUR][1000 genomes]
rs11155669	0.84[EUR][1000 genomes]
rs11155670	0.84[EUR][1000 genomes]
rs11155671	0.86[EUR][1000 genomes]
rs11155674	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11155675	0.84[EUR][1000 genomes]
rs11155676	0.84[EUR][1000 genomes]
rs11155677	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11155679	0.86[EUR][1000 genomes]
rs11155680	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11155681	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11155682	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11155683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155689	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1125	0.83[EUR][1000 genomes]
rs11968921	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12111376	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12174349	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12174716	0.86[EUR][1000 genomes]
rs12175504	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12175575	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12176034	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12178310	0.88[EUR][1000 genomes]
rs12179031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12182220	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12183664	0.87[EUR][1000 genomes]
rs12191643	0.84[EUR][1000 genomes]
rs12195866	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12200670	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12201033	0.82[EUR][1000 genomes]
rs12203703	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12205092	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12206402	0.86[EUR][1000 genomes]
rs12210605	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12211511	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12213779	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12523793	0.80[EUR][1000 genomes]
rs12525871	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526675	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12528279	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12529698	0.86[EUR][1000 genomes]
rs12660304	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12662162	0.82[EUR][1000 genomes]
rs12662174	0.84[EUR][1000 genomes]
rs13215691	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1413654	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1413655	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17672976	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17673294	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17745062	0.84[EUR][1000 genomes]
rs1889473	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1934534	0.88[EUR][1000 genomes]
rs1984111	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2064520	0.81[EUR][1000 genomes]
rs2064521	0.83[EUR][1000 genomes]
rs2065663	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2065664	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2095375	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2151909	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2151912	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2151913	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2184369	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184370	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2185352	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2210683	0.83[EUR][1000 genomes]
rs2275045	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2275046	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2297928	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2297930	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2297932	0.89[EUR][1000 genomes]
rs2342764	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2342765	0.83[EUR][1000 genomes]
rs2342857	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2342858	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2342860	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2342861	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2880435	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2880436	0.81[EUR][1000 genomes]
rs34157004	0.87[EUR][1000 genomes]
rs34337297	0.88[EUR][1000 genomes]
rs35031906	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35443312	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35763894	0.85[EUR][1000 genomes]
rs35830138	0.87[EUR][1000 genomes]
rs35961297	0.87[EUR][1000 genomes]
rs35967444	0.87[EUR][1000 genomes]
rs3763161	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3763162	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3763163	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3798761	0.87[EUR][1000 genomes]
rs3805748	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3805749	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3805750	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805751	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805752	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805753	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3828700	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3924871	0.88[EUR][1000 genomes]
rs4039600	0.87[EUR][1000 genomes]
rs4242279	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4354168	0.88[EUR][1000 genomes]
rs4380763	0.87[EUR][1000 genomes]
rs4421206	0.87[EUR][1000 genomes]
rs4455682	0.88[EUR][1000 genomes]
rs4552	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4642491	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4816	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4869730	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4869731	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4869750	0.83[EUR][1000 genomes]
rs4869812	0.87[EUR][1000 genomes]
rs4869966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870015	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4870019	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4870020	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4870048	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4870049	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870050	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870052	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870055	0.82[EUR][1000 genomes]
rs4870139	0.81[EUR][1000 genomes]
rs4870144	0.81[EUR][1000 genomes]
rs4870267	0.87[EUR][1000 genomes]
rs4870388	0.87[EUR][1000 genomes]
rs4870493	0.88[EUR][1000 genomes]
rs4870509	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4870529	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55763431	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55849538	0.85[EUR][1000 genomes]
rs55938765	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55993747	0.83[EUR][1000 genomes]
rs56091542	0.85[EUR][1000 genomes]
rs56103941	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56374774	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56397000	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57938011	0.85[EUR][1000 genomes]
rs58189451	0.84[EUR][1000 genomes]
rs60424881	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62439811	0.86[EUR][1000 genomes]
rs62439836	0.86[EUR][1000 genomes]
rs62439837	0.87[EUR][1000 genomes]
rs62439840	0.87[EUR][1000 genomes]
rs62439842	0.87[EUR][1000 genomes]
rs62439843	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62441279	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62441284	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62441335	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6420132	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66516768	0.87[EUR][1000 genomes]
rs6899661	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6903998	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6913486	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6914319	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6936395	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7450246	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7738696	0.82[EUR][1000 genomes]
rs7740278	0.86[EUR][1000 genomes]
rs7740784	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7743823	0.82[EUR][1000 genomes]
rs7744015	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744105	0.82[EUR][1000 genomes]
rs7745915	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7752089	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7752594	0.86[EUR][1000 genomes]
rs7753812	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7754399	0.87[EUR][1000 genomes]
rs7764846	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7767622	0.87[EUR][1000 genomes]
rs7769115	0.82[EUR][1000 genomes]
rs7818	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs868375	0.83[EUR][1000 genomes]
rs880245	0.81[EUR][1000 genomes]
rs880246	0.81[EUR][1000 genomes]
rs9027	0.82[EUR][1000 genomes]
rs9285522	0.86[EUR][1000 genomes]
rs9285523	0.82[EUR][1000 genomes]
rs9285524	0.91[EUR][1000 genomes]
rs9285525	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322192	0.83[EUR][1000 genomes]
rs9322193	0.84[EUR][1000 genomes]
rs9322196	0.83[EUR][1000 genomes]
rs9322197	0.86[EUR][1000 genomes]
rs9322198	0.83[EUR][1000 genomes]
rs9322200	0.84[EUR][1000 genomes]
rs9322204	0.85[EUR][1000 genomes]
rs9322206	0.88[EUR][1000 genomes]
rs9322207	0.87[EUR][1000 genomes]
rs9322208	0.88[EUR][1000 genomes]
rs9322209	0.88[EUR][1000 genomes]
rs9322210	0.88[EUR][1000 genomes]
rs9322214	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322215	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322217	0.81[EUR][1000 genomes]
rs9322218	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322219	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322220	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322221	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322223	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322224	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs933055	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9371199	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9371201	0.86[EUR][1000 genomes]
rs9371207	0.81[EUR][1000 genomes]
rs9371486	0.87[EUR][1000 genomes]
rs9372044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9377228	0.81[EUR][1000 genomes]
rs9377229	0.84[EUR][1000 genomes]
rs9377230	0.83[EUR][1000 genomes]
rs9379348	0.83[EUR][1000 genomes]
rs9383546	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9383812	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9383843	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9383844	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383864	0.82[EUR][1000 genomes]
rs9383865	0.82[EUR][1000 genomes]
rs9383874	0.81[EUR][1000 genomes]
rs9393132	0.88[EUR][1000 genomes]
rs9393175	0.87[EUR][1000 genomes]
rs9397022	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9397036	0.82[EUR][1000 genomes]
rs9397357	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9404047	0.81[EUR][1000 genomes]
rs9404048	0.83[EUR][1000 genomes]
rs9406286	0.85[EUR][1000 genomes]
rs9406345	0.84[EUR][1000 genomes]
rs9406346	0.83[EUR][1000 genomes]
rs9478291	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9478848	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9479094	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9479494	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9479808	0.83[EUR][1000 genomes]
rs9479810	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9480009	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9480031	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9485405	0.81[EUR][1000 genomes]
rs9485408	0.83[EUR][1000 genomes]
rs9498384	0.80[EUR][1000 genomes]
rs9505823	0.84[EUR][1000 genomes]
rs9505824	0.84[EUR][1000 genomes]
rs9505826	0.80[EUR][1000 genomes]
rs9505967	0.88[EUR][1000 genomes]
rs9505972	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9505974	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9505975	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9505982	0.83[EUR][1000 genomes]
rs9505983	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs952165	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs952166	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs958953	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9688350	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9688412	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9688452	0.88[EUR][1000 genomes]
rs9688517	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9688699	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9688750	0.90[EUR][1000 genomes]
rs9688794	0.84[EUR][1000 genomes]
rs9688803	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9688809	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9688858	0.88[EUR][1000 genomes]
rs9688861	0.85[EUR][1000 genomes]
rs9688867	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9688897	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9688902	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9688938	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9688940	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9689025	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9689036	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689084	0.86[EUR][1000 genomes]
rs9689242	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9689269	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9689340	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9689447	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9689599	0.84[EUR][1000 genomes]
rs9689694	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9689702	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9689716	0.86[EUR][1000 genomes]
rs9689723	0.86[EUR][1000 genomes]
rs9718079	0.81[EUR][1000 genomes]
rs9765861	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9765929	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9765965	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9766004	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9766037	0.82[EUR][1000 genomes]
rs9766214	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9766444	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9766525	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9766562	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9766886	0.85[EUR][1000 genomes]
rs9767077	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9767105	0.87[EUR][1000 genomes]
rs9767113	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9767122	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767123	0.88[EUR][1000 genomes]
rs9767192	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9767309	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9767554	0.82[EUR][1000 genomes]
rs9767555	0.81[EUR][1000 genomes]
rs9767652	0.90[EUR][1000 genomes]
rs9767727	0.88[EUR][1000 genomes]
rs9800580	0.84[EUR][1000 genomes]
rs9800603	0.84[EUR][1000 genomes]
rs9800614	0.86[EUR][1000 genomes]
rs9800686	0.82[EUR][1000 genomes]
rs9800736	0.88[EUR][1000 genomes]
rs9800806	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9800871	0.86[EUR][1000 genomes]
rs9968911	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs62441303	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs62441303	RP11-350J20.9	cis	Skin Sun Exposed Lower leg	GTEx
rs62441303	RP11-350J20.5	cis	Nerve Tibial	GTEx
rs62441303	RP11-350J20.5	cis	Artery Aorta	GTEx
rs62441303	RP11-350J20.5	cis	Stomach	GTEx
rs62441303	RP11-350J20.5	cis	lung	GTEx
rs62441303	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs62441303	RP11-350J20.5	cis	Thyroid	GTEx
rs62441303	RP11-350J20.5	cis	Artery Tibial	GTEx
rs62441303	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs62441303	GINM1	cis	Whole Blood	GTEx
rs62441303	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs62441303	NUP43	cis	Whole Blood	GTEx
rs62441303	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs62441303	RP11-350J20.5	cis	Esophagus Muscularis	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150071800-150092600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:150071800-150092800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:150071800-150100200	Weak transcription	Gastric	stomach
4	chr6:150072000-150094200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:150072000-150111000	Weak transcription	Fetal Kidney	kidney
6	chr6:150072000-150152000	Weak transcription	Aorta	Aorta
7	chr6:150072400-150104600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:150072400-150111400	Weak transcription	Colonic Mucosa	Colon
9	chr6:150073000-150094400	Weak transcription	Lung	lung
10	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
11	chr6:150074200-150101000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:150075800-150094800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:150077000-150115400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:150077200-150118400	Weak transcription	Pancreas	Pancrea
15	chr6:150077400-150142400	Weak transcription	Fetal Heart	heart
16	chr6:150077800-150118400	Weak transcription	Psoas Muscle	Psoas
17	chr6:150078200-150092600	Weak transcription	Left Ventricle	heart
18	chr6:150081600-150101200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:150081800-150092800	Weak transcription	Spleen	Spleen
20	chr6:150081800-150092800	Weak transcription	HSMMtube	muscle
21	chr6:150082400-150092800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:150083600-150092800	Weak transcription	Ovary	ovary
23	chr6:150084800-150092200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:150085600-150089200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:150085600-150091200	Strong transcription	Fetal Intestine Small	intestine
26	chr6:150086200-150092800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:150086800-150088800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:150086800-150088800	ZNF genes & repeats	Brain Germinal Matrix	brain
29	chr6:150086800-150089000	Strong transcription	Fetal Intestine Large	intestine
30	chr6:150087000-150088800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr6:150087000-150088800	Strong transcription	Placenta	Placenta
32	chr6:150087000-150093800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:150087000-150096600	Weak transcription	Esophagus	oesophagus
34	chr6:150087200-150088800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:150087200-150088800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:150087200-150089000	ZNF genes & repeats	Primary B cells from cord blood	blood
37	chr6:150087200-150089000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:150087200-150089000	Genic enhancers	Muscle Satellite Cultured Cells	--
39	chr6:150087200-150089000	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr6:150087200-150095400	Strong transcription	Primary T cells from cord blood	blood
41	chr6:150087200-150154000	Weak transcription	Small Intestine	intestine
42	chr6:150087400-150091400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr6:150087400-150134000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:150087600-150088800	Strong transcription	Brain Angular Gyrus	brain
45	chr6:150087600-150088800	Strong transcription	HepG2	liver
46	chr6:150087600-150089400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:150087600-150089400	Strong transcription	Fetal Muscle Trunk	muscle
48	chr6:150087600-150089600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:150087600-150091000	Weak transcription	HSMM	muscle
50	chr6:150087600-150091200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

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