Variant report

Variant	rs12200670
Chromosome Location	chr6:150035055-150035056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150028614..150031485-chr6:150034400..150036534,2	MCF-7	breast:
2	chr6:150034227..150035825-chr6:150066563..150069201,2	K562	blood:

Variant related genes	Relation type
ENSG00000120253	Chromatin interaction

Extended variants
information (count: 345 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:340)

rs_ID	r²[population]
rs10214845	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10452626	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10457850	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10457851	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10747275	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10747276	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10782310	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10782311	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10782312	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10782313	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10782314	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10782315	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10782316	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10782317	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10782318	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1080670	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10872643	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10872644	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10872645	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10872646	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10872647	0.92[EUR][1000 genomes]
rs10872648	0.92[EUR][1000 genomes]
rs10872649	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10872650	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10872651	0.91[EUR][1000 genomes]
rs10872652	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872653	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872656	0.81[EUR][1000 genomes]
rs1112729	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1112730	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11155662	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155668	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11155669	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11155670	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11155671	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11155672	0.82[EUR][1000 genomes]
rs11155674	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155675	0.92[EUR][1000 genomes]
rs11155676	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11155677	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11155679	0.91[EUR][1000 genomes]
rs11155680	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11155681	0.82[EUR][1000 genomes]
rs11155682	0.83[EUR][1000 genomes]
rs11155683	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11155685	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11155689	0.82[EUR][1000 genomes]
rs1125	0.95[EUR][1000 genomes]
rs12111376	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12174349	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12174716	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12175504	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12175575	0.88[EUR][1000 genomes]
rs12176034	0.80[EUR][1000 genomes]
rs12178310	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12179031	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12182220	0.82[EUR][1000 genomes]
rs12183664	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12191643	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12193364	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12195866	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12201033	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12203703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12205092	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12206402	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12210605	0.85[EUR][1000 genomes]
rs12211511	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12213779	0.88[EUR][1000 genomes]
rs12234128	0.89[EUR][1000 genomes]
rs12523793	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12525871	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12526675	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12528279	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12529698	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12660304	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12662162	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12662174	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13215691	0.82[EUR][1000 genomes]
rs1413654	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1413655	0.81[EUR][1000 genomes]
rs17672976	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17673294	0.82[EUR][1000 genomes]
rs17745062	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1889473	0.81[EUR][1000 genomes]
rs1934534	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1984111	0.81[EUR][1000 genomes]
rs2064520	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2064521	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2065663	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2065664	0.89[EUR][1000 genomes]
rs2095375	0.82[EUR][1000 genomes]
rs2144207	0.84[EUR][1000 genomes]
rs2151909	0.82[EUR][1000 genomes]
rs2151912	0.81[EUR][1000 genomes]
rs2151913	0.82[EUR][1000 genomes]
rs2184369	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2184370	0.85[EUR][1000 genomes]
rs2185352	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275045	0.85[EUR][1000 genomes]
rs2275046	0.81[EUR][1000 genomes]
rs2297928	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2297930	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2297932	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2342764	0.85[EUR][1000 genomes]
rs2342857	0.82[EUR][1000 genomes]
rs2342858	0.82[EUR][1000 genomes]
rs2342860	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2342861	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2880435	0.81[EUR][1000 genomes]
rs34157004	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34337297	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35031906	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35443312	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35763894	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35830138	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35961297	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35967444	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3734295	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3763161	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3763162	0.82[EUR][1000 genomes]
rs3763163	0.82[EUR][1000 genomes]
rs3777949	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3798761	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805748	0.87[EUR][1000 genomes]
rs3805749	0.89[EUR][1000 genomes]
rs3805750	0.82[EUR][1000 genomes]
rs3805751	0.82[EUR][1000 genomes]
rs3805752	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3805753	0.82[EUR][1000 genomes]
rs3828700	0.82[EUR][1000 genomes]
rs3924871	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4039600	0.92[EUR][1000 genomes]
rs4242279	0.85[EUR][1000 genomes]
rs4354168	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4380763	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4421206	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4455682	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4552	0.82[EUR][1000 genomes]
rs4642491	0.87[EUR][1000 genomes]
rs4816	0.82[EUR][1000 genomes]
rs4869730	0.82[EUR][1000 genomes]
rs4869731	0.82[EUR][1000 genomes]
rs4869812	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4869923	0.83[EUR][1000 genomes]
rs4869966	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4870015	0.81[EUR][1000 genomes]
rs4870019	0.82[EUR][1000 genomes]
rs4870020	0.82[EUR][1000 genomes]
rs4870048	0.81[EUR][1000 genomes]
rs4870049	0.85[EUR][1000 genomes]
rs4870050	0.86[EUR][1000 genomes]
rs4870052	0.85[EUR][1000 genomes]
rs4870139	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4870144	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4870267	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870388	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4870493	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4870509	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870529	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55763431	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55849538	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55938765	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55993747	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56091542	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56103941	0.85[EUR][1000 genomes]
rs56374774	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56397000	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57938011	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58189451	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60424881	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62439811	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62439836	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62439837	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62439840	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62439842	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62439843	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62441279	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62441284	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62441303	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62441335	0.82[EUR][1000 genomes]
rs6420132	0.81[EUR][1000 genomes]
rs66516768	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6899661	0.82[EUR][1000 genomes]
rs6903998	0.81[EUR][1000 genomes]
rs6913486	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914319	0.82[EUR][1000 genomes]
rs6936395	0.82[EUR][1000 genomes]
rs7381555	0.88[EUR][1000 genomes]
rs7450246	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740278	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7740784	0.85[EUR][1000 genomes]
rs7744015	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7745915	0.81[EUR][1000 genomes]
rs7752089	0.85[EUR][1000 genomes]
rs7752594	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7753812	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7754399	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7764846	0.82[EUR][1000 genomes]
rs7767622	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7818	0.82[EUR][1000 genomes]
rs9027	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9285521	0.89[EUR][1000 genomes]
rs9285522	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9285523	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9285524	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9285525	0.81[EUR][1000 genomes]
rs9286597	0.84[EUR][1000 genomes]
rs9322188	0.87[ASN][1000 genomes]
rs9322189	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322190	0.83[EUR][1000 genomes]
rs9322192	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322193	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322194	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322196	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9322197	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322198	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9322199	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322200	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9322204	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9322206	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322207	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322208	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322209	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322210	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322214	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322215	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9322217	0.88[EUR][1000 genomes]
rs9322218	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322219	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322220	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322221	0.88[EUR][1000 genomes]
rs9322223	0.81[EUR][1000 genomes]
rs9322224	0.81[EUR][1000 genomes]
rs933055	0.82[EUR][1000 genomes]
rs9371199	0.85[EUR][1000 genomes]
rs9371201	0.80[EUR][1000 genomes]
rs9371486	0.81[EUR][1000 genomes]
rs9372044	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9377228	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9377229	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9377230	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9379314	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9379348	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9383546	0.81[EUR][1000 genomes]
rs9383812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393132	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393175	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9397022	0.82[EUR][1000 genomes]
rs9397357	0.82[EUR][1000 genomes]
rs9399692	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9399693	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9404047	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9404048	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9406286	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9406345	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9406346	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9478291	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9478848	0.81[EUR][1000 genomes]
rs9479094	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9479494	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9479808	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9479810	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9480009	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9480031	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9485405	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9485408	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9498382	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9498384	0.92[EUR][1000 genomes]
rs9505823	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9505824	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9505826	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9505967	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9505972	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9505974	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9505975	0.83[EUR][1000 genomes]
rs9505982	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9505983	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs952165	0.81[EUR][1000 genomes]
rs952166	0.81[EUR][1000 genomes]
rs9688350	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9688412	0.81[EUR][1000 genomes]
rs9688452	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9688517	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9688699	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9688750	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9688794	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9688803	0.85[EUR][1000 genomes]
rs9688809	0.85[EUR][1000 genomes]
rs9688858	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9688861	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9688867	0.87[EUR][1000 genomes]
rs9688897	0.84[EUR][1000 genomes]
rs9688902	0.85[EUR][1000 genomes]
rs9688938	0.85[EUR][1000 genomes]
rs9688940	0.85[EUR][1000 genomes]
rs9689025	0.83[EUR][1000 genomes]
rs9689036	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9689084	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9689242	0.85[EUR][1000 genomes]
rs9689269	0.82[EUR][1000 genomes]
rs9689340	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9689447	0.83[EUR][1000 genomes]
rs9689599	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9689694	0.85[EUR][1000 genomes]
rs9689702	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9689716	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9689723	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9717327	0.91[EUR][1000 genomes]
rs9718079	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9765861	0.83[EUR][1000 genomes]
rs9765929	0.88[EUR][1000 genomes]
rs9765965	0.87[EUR][1000 genomes]
rs9766004	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9766037	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9766214	0.87[EUR][1000 genomes]
rs9766444	0.87[EUR][1000 genomes]
rs9766525	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9766562	0.84[EUR][1000 genomes]
rs9766886	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9767077	0.85[EUR][1000 genomes]
rs9767105	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9767113	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9767122	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9767123	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9767192	0.81[EUR][1000 genomes]
rs9767309	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9767554	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9767555	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9767652	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9767713	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9767727	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9800580	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9800603	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9800614	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9800686	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9800736	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9800806	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9800871	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9968911	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs12200670	RP11-350J20.5	cis	lung	GTEx
rs12200670	RP11-350J20.9	cis	Esophagus Mucosa	GTEx
rs12200670	RP11-350J20.5	cis	Nerve Tibial	GTEx
rs12200670	RP11-350J20.5	cis	Thyroid	GTEx
rs12200670	RAET1G	cis	Thyroid	GTEx
rs12200670	GINM1	cis	Whole Blood	GTEx
rs12200670	PCMT1	cis	Esophagus Muscularis	GTEx
rs12200670	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs12200670	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs12200670	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs12200670	RP11-350J20.5	cis	Artery Tibial	GTEx
rs12200670	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs12200670	NUP43	cis	Whole Blood	GTEx
rs12200670	RP11-350J20.5	cis	Artery Aorta	GTEx
rs12200670	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs12200670	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149987000-150036800	Weak transcription	Hela-S3	cervix
2	chr6:150005600-150037400	Weak transcription	Esophagus	oesophagus
3	chr6:150005600-150037800	Weak transcription	Gastric	stomach
4	chr6:150007800-150036800	Weak transcription	Brain Germinal Matrix	brain
5	chr6:150013600-150037200	Weak transcription	Colonic Mucosa	Colon
6	chr6:150015200-150037400	Weak transcription	Lung	lung
7	chr6:150015600-150036400	Weak transcription	Pancreas	Pancrea
8	chr6:150018200-150037000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:150019600-150037000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:150020000-150037400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:150021200-150036400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:150021200-150037200	Weak transcription	HSMM	muscle
13	chr6:150021800-150036200	Weak transcription	Left Ventricle	heart
14	chr6:150023200-150036200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:150023200-150036600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:150023200-150036600	Weak transcription	Primary B cells from cord blood	blood
17	chr6:150023200-150036800	Weak transcription	A549	lung
18	chr6:150023200-150037200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:150023200-150037200	Weak transcription	NH-A	brain
20	chr6:150023200-150038200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:150023400-150036600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:150023400-150036600	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:150023400-150037000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr6:150023800-150036600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:150024800-150036800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:150024800-150037200	Weak transcription	Fetal Thymus	thymus
27	chr6:150025200-150037000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:150026000-150035200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:150026600-150036600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:150026600-150036800	Weak transcription	HMEC	breast
31	chr6:150026600-150036800	Weak transcription	Osteobl	bone
32	chr6:150028000-150036400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:150028000-150037000	Weak transcription	NHDF-Ad	bronchial
34	chr6:150028000-150038400	Weak transcription	Spleen	Spleen
35	chr6:150028600-150036800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:150029600-150038400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:150030000-150037000	Weak transcription	Thymus	Thymus
38	chr6:150030400-150036400	Weak transcription	Right Atrium	heart
39	chr6:150030400-150037800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:150030400-150037800	Weak transcription	Aorta	Aorta
41	chr6:150030600-150036400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:150030600-150036800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:150030600-150036800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:150030600-150036800	Weak transcription	NHEK	skin
45	chr6:150030600-150037000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:150030600-150037200	Weak transcription	Brain Anterior Caudate	brain
47	chr6:150030600-150037400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr6:150030600-150037400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr6:150030600-150037600	Weak transcription	Fetal Brain Female	brain
50	chr6:150030600-150037800	Weak transcription	H9 Cell Line	embryonic stem cell

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Variant report

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