Variant report

Variant	rs4870144
Chromosome Location	chr6:149896676-149896677
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149891208..149893657-chr6:149895045..149897012,2	K562	blood:
2	chr6:149886533..149890851-chr6:149891817..149897125,7	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KATNA1-2	chr6:149896601-149897260	ENSG00000237502.2

Variant related genes	Relation type
ENSG00000055211	Chromatin interaction

Extended variants
information (count: 255 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:252)

rs_ID	r²[population]
rs10214845	0.82[EUR][1000 genomes]
rs10452626	0.81[EUR][1000 genomes]
rs10457850	0.81[EUR][1000 genomes]
rs10457851	0.81[EUR][1000 genomes]
rs10747275	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10747276	0.90[EUR][1000 genomes]
rs10782310	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10782311	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10782312	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10782313	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10782314	0.91[EUR][1000 genomes]
rs10782315	0.89[EUR][1000 genomes]
rs10782316	0.90[EUR][1000 genomes]
rs10782317	0.90[EUR][1000 genomes]
rs10782318	0.90[EUR][1000 genomes]
rs1080670	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10872643	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10872644	0.91[EUR][1000 genomes]
rs10872645	0.87[EUR][1000 genomes]
rs10872646	0.90[EUR][1000 genomes]
rs10872647	0.89[EUR][1000 genomes]
rs10872648	0.89[EUR][1000 genomes]
rs10872649	0.90[EUR][1000 genomes]
rs10872650	0.90[EUR][1000 genomes]
rs10872651	0.84[EUR][1000 genomes]
rs10872652	0.81[EUR][1000 genomes]
rs1112729	0.81[EUR][1000 genomes]
rs1112730	0.81[EUR][1000 genomes]
rs11155662	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11155668	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155669	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155670	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11155671	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11155674	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11155675	0.89[EUR][1000 genomes]
rs11155676	0.84[EUR][1000 genomes]
rs11155677	0.88[EUR][1000 genomes]
rs11155679	0.88[EUR][1000 genomes]
rs11155680	0.85[EUR][1000 genomes]
rs11155685	0.80[EUR][1000 genomes]
rs1125	0.92[EUR][1000 genomes]
rs12111376	0.91[EUR][1000 genomes]
rs12174349	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12174716	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12175504	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12175575	0.81[EUR][1000 genomes]
rs12178310	0.91[EUR][1000 genomes]
rs12183664	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12191643	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12193364	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12195866	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12200670	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12201033	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12203703	0.92[EUR][1000 genomes]
rs12205092	0.90[EUR][1000 genomes]
rs12206402	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12211511	0.88[EUR][1000 genomes]
rs12213779	0.81[EUR][1000 genomes]
rs12234128	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12523793	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12525871	0.81[EUR][1000 genomes]
rs12526675	0.91[EUR][1000 genomes]
rs12528279	0.90[EUR][1000 genomes]
rs12529698	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12660304	0.91[EUR][1000 genomes]
rs12662162	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12662174	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1413654	0.82[EUR][1000 genomes]
rs17672976	0.81[EUR][1000 genomes]
rs17745062	0.87[EUR][1000 genomes]
rs1934534	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2064520	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2064521	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2065663	0.90[EUR][1000 genomes]
rs2065664	0.83[EUR][1000 genomes]
rs2144207	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2184369	0.80[EUR][1000 genomes]
rs2185352	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2297928	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2297930	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2297932	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2342860	0.80[EUR][1000 genomes]
rs2342861	0.80[EUR][1000 genomes]
rs34157004	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34337297	0.89[EUR][1000 genomes]
rs35031906	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35443312	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35763894	0.90[EUR][1000 genomes]
rs35830138	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35961297	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35967444	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3734295	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3763161	0.89[EUR][1000 genomes]
rs3777949	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3798761	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3805748	0.81[EUR][1000 genomes]
rs3805749	0.83[EUR][1000 genomes]
rs3924871	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4039600	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4354168	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4380763	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4421206	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4455682	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4642491	0.80[EUR][1000 genomes]
rs4869812	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4869923	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4869966	0.81[EUR][1000 genomes]
rs4870139	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4870267	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4870388	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4870493	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4870509	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4870529	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55763431	0.80[EUR][1000 genomes]
rs55849538	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55938765	0.90[EUR][1000 genomes]
rs55993747	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56091542	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56374774	0.80[EUR][1000 genomes]
rs56397000	0.91[EUR][1000 genomes]
rs57938011	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58189451	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60424881	0.91[EUR][1000 genomes]
rs62439782	0.85[AMR][1000 genomes]
rs62439784	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62439811	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62439836	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62439837	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62439840	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62439842	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62439843	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62441279	0.92[EUR][1000 genomes]
rs62441284	0.90[EUR][1000 genomes]
rs62441303	0.81[EUR][1000 genomes]
rs66516768	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6913486	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7381555	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7450246	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7740278	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7744015	0.80[EUR][1000 genomes]
rs7752594	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7753812	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7754399	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7767622	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9027	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9285521	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9285522	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9285523	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9285524	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9286597	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9322188	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322189	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322190	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322192	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322193	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322194	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322196	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322197	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9322198	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322199	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9322200	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322204	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322206	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322207	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322208	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9322209	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322210	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322214	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322215	0.88[EUR][1000 genomes]
rs9322217	0.83[EUR][1000 genomes]
rs9322219	0.80[EUR][1000 genomes]
rs9322220	0.82[EUR][1000 genomes]
rs9322221	0.82[EUR][1000 genomes]
rs9372044	0.80[EUR][1000 genomes]
rs9377228	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9377229	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9377230	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9379314	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9379348	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9383812	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9383844	0.92[EUR][1000 genomes]
rs9393132	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393175	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9399692	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9399693	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9404047	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9404048	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9406286	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9406345	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9406346	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9478291	0.90[EUR][1000 genomes]
rs9479094	0.92[EUR][1000 genomes]
rs9479494	0.91[EUR][1000 genomes]
rs9479808	0.82[EUR][1000 genomes]
rs9479810	0.87[EUR][1000 genomes]
rs9480009	0.90[EUR][1000 genomes]
rs9480031	0.90[EUR][1000 genomes]
rs9485405	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9485408	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9498382	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9498383	0.84[AMR][1000 genomes]
rs9498384	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9505823	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9505824	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9505826	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9505967	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9505972	0.84[EUR][1000 genomes]
rs9505982	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9505983	0.90[EUR][1000 genomes]
rs9688350	0.91[EUR][1000 genomes]
rs9688452	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9688517	0.91[EUR][1000 genomes]
rs9688699	0.91[EUR][1000 genomes]
rs9688750	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9688794	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9688858	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9688861	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9688867	0.80[EUR][1000 genomes]
rs9689084	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9689340	0.91[EUR][1000 genomes]
rs9689599	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9689702	0.91[EUR][1000 genomes]
rs9689716	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9689723	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9717327	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9718079	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9765929	0.81[EUR][1000 genomes]
rs9765965	0.81[EUR][1000 genomes]
rs9766004	0.90[EUR][1000 genomes]
rs9766037	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9766214	0.81[EUR][1000 genomes]
rs9766444	0.81[EUR][1000 genomes]
rs9766525	0.82[EUR][1000 genomes]
rs9766886	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9767105	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9767113	0.92[EUR][1000 genomes]
rs9767122	0.82[EUR][1000 genomes]
rs9767123	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9767309	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9767554	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9767555	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9767652	0.91[EUR][1000 genomes]
rs9767713	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9767727	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9800580	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9800603	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9800614	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9800686	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9800736	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9800806	0.91[EUR][1000 genomes]
rs9800871	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9968911	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs4870144	RAET1G	cis	Thyroid	GTEx
rs4870144	GINM1	cis	Whole Blood	GTEx
rs4870144	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs4870144	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs4870144	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs4870144	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs4870144	RP11-350J20.5	cis	Thyroid	GTEx
rs4870144	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs4870144	RP11-350J20.5	cis	Artery Tibial	GTEx
rs4870144	RP11-350J20.9	cis	Esophagus Mucosa	GTEx
rs4870144	LRP11	cis	Skin Sun Exposed Lower leg	GTEx
rs4870144	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs4870144	RP11-350J20.5	cis	lung	GTEx
rs4870144	RP11-350J20.5	cis	Artery Aorta	GTEx
rs4870144	NUP43	cis	Whole Blood	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149888400-149897400	Weak transcription	Lung	lung
2	chr6:149888400-149901600	Weak transcription	Aorta	Aorta
3	chr6:149888400-149902000	Weak transcription	Gastric	stomach
4	chr6:149888400-149911600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:149888600-149897200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:149888600-149897400	Weak transcription	Right Ventricle	heart
7	chr6:149888600-149898000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:149888600-149898400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:149888600-149901400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:149888600-149901400	Weak transcription	Colonic Mucosa	Colon
11	chr6:149888600-149901600	Weak transcription	NH-A	brain
12	chr6:149888600-149905200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:149888600-149907600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:149888600-149909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:149888600-149912800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:149888600-149922000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:149888800-149896800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:149888800-149897200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:149888800-149898000	Weak transcription	Fetal Kidney	kidney
20	chr6:149888800-149898200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:149888800-149898200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:149888800-149898200	Weak transcription	Esophagus	oesophagus
23	chr6:149888800-149901400	Weak transcription	Fetal Brain Female	brain
24	chr6:149888800-149901600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:149888800-149901600	Weak transcription	NHLF	lung
26	chr6:149888800-149901800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:149888800-149904800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:149888800-149914800	Weak transcription	A549	lung
29	chr6:149889000-149897600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:149889000-149898200	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr6:149889000-149898400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:149889000-149901400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr6:149889000-149901600	Weak transcription	NHDF-Ad	bronchial
34	chr6:149889000-149902000	Weak transcription	Osteobl	bone
35	chr6:149889000-149905400	Weak transcription	HSMMtube	muscle
36	chr6:149889000-149908400	Weak transcription	Pancreas	Pancrea
37	chr6:149889000-149928000	Weak transcription	Stomach Mucosa	stomach
38	chr6:149889200-149897600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:149889200-149898000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:149889200-149898400	Weak transcription	Fetal Lung	lung
41	chr6:149889200-149919600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr6:149889400-149896800	Weak transcription	Spleen	Spleen
43	chr6:149889400-149897800	Weak transcription	Brain Germinal Matrix	brain
44	chr6:149889400-149898000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:149889400-149898000	Weak transcription	HSMM	muscle
46	chr6:149889400-149898200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr6:149889400-149901200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:149889400-149901600	Weak transcription	Colon Smooth Muscle	Colon
49	chr6:149889400-149911800	Weak transcription	Psoas Muscle	Psoas
50	chr6:149889400-149924200	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links