Variant report

Variant	rs9377230
Chromosome Location	chr6:149934743-149934744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149927260..149929219-chr6:149933364..149935307,2	MCF-7	breast:
2	chr16:84500130..84500905-chr6:149934076..149935073,3	MCF-7	breast:
3	chr6:149934412..149936656-chr6:149968719..149970315,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186625	Chromatin interaction

Extended variants
information (count: 311 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:306)

rs_ID	r²[population]
rs10214845	0.96[CEU][hapmap];0.87[CHB][hapmap];0.84[EUR][1000 genomes]
rs10452626	0.83[EUR][1000 genomes]
rs10457850	0.83[EUR][1000 genomes]
rs10457851	0.96[CEU][hapmap];0.87[CHB][hapmap];0.83[EUR][1000 genomes]
rs10485097	0.81[CHB][hapmap]
rs10747275	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10747276	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs10782310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10782311	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10782312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10782313	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10782314	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10782315	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10782316	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10782317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10782318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1080670	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10872643	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10872644	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872645	0.87[EUR][1000 genomes]
rs10872646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872647	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs10872648	0.89[EUR][1000 genomes]
rs10872649	0.91[EUR][1000 genomes]
rs10872650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs10872651	0.86[EUR][1000 genomes]
rs10872652	0.83[EUR][1000 genomes]
rs10872653	0.80[EUR][1000 genomes]
rs10872656	0.95[CEU][hapmap];0.87[CHB][hapmap]
rs1112729	0.83[EUR][1000 genomes]
rs1112730	0.95[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs11155662	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11155668	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11155669	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11155670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11155671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11155674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11155675	0.89[EUR][1000 genomes]
rs11155676	0.85[EUR][1000 genomes]
rs11155677	0.90[EUR][1000 genomes]
rs11155679	0.89[EUR][1000 genomes]
rs11155680	0.86[EUR][1000 genomes]
rs11155683	0.81[EUR][1000 genomes]
rs11155685	0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[EUR][1000 genomes]
rs11155689	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs1125	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs1125107	0.87[CHB][hapmap]
rs12111376	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12174349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12174716	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12175504	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12175575	0.83[EUR][1000 genomes]
rs12176034	0.92[CEU][hapmap];0.93[CHB][hapmap]
rs12178310	0.90[EUR][1000 genomes]
rs12179031	0.81[EUR][1000 genomes]
rs12183664	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12191643	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12193364	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12195866	0.95[CEU][hapmap];0.87[CHB][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12200670	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12201033	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12203703	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12205092	0.91[EUR][1000 genomes]
rs12206402	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12210605	0.81[EUR][1000 genomes]
rs12211511	0.89[EUR][1000 genomes]
rs12213779	0.83[EUR][1000 genomes]
rs12234128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12523793	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12524946	0.81[CHB][hapmap]
rs12525871	0.83[EUR][1000 genomes]
rs12526675	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12528279	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12529698	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12660304	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12662162	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12662174	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12665533	0.81[CHB][hapmap]
rs1413654	0.96[CEU][hapmap];0.87[CHB][hapmap];0.84[EUR][1000 genomes]
rs1474640	0.81[CHB][hapmap]
rs1572229	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17672976	0.83[EUR][1000 genomes]
rs17745062	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1934534	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2064520	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2064521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2065663	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs2065664	0.95[CEU][hapmap];0.80[CHB][hapmap];0.84[EUR][1000 genomes]
rs2095375	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs2144207	0.84[EUR][1000 genomes]
rs2151913	0.95[CEU][hapmap];0.87[CHB][hapmap]
rs2184369	0.82[EUR][1000 genomes]
rs2185352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2297928	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2297930	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2297932	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2341551	0.81[CHB][hapmap]
rs2341768	0.81[CHB][hapmap]
rs2342858	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs2342860	0.82[EUR][1000 genomes]
rs2342861	0.82[EUR][1000 genomes]
rs2880075	0.81[CHB][hapmap]
rs34157004	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34337297	0.90[EUR][1000 genomes]
rs35031906	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35443312	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35763894	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35830138	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35961297	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35967444	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3734295	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3763161	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3777949	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3798761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3805748	0.82[EUR][1000 genomes]
rs3805749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs3805752	0.81[EUR][1000 genomes]
rs3805753	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs3924871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4039600	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4354168	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4380763	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4421206	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4455682	1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4552	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs4642491	0.82[EUR][1000 genomes]
rs4816	0.95[CEU][hapmap];0.87[CHB][hapmap]
rs4869731	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs4869812	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4869923	0.83[EUR][1000 genomes]
rs4869966	0.83[EUR][1000 genomes]
rs4870139	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4870144	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4870267	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4870388	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4870493	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4870509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4870529	0.87[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4897137	0.81[CHB][hapmap]
rs4897138	0.81[CHB][hapmap]
rs55763431	0.82[EUR][1000 genomes]
rs55849538	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55938765	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55993747	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56091542	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56103941	0.81[EUR][1000 genomes]
rs56374774	0.82[EUR][1000 genomes]
rs56397000	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57938011	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58189451	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60424881	0.93[EUR][1000 genomes]
rs62439782	0.81[AMR][1000 genomes]
rs62439784	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62439811	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62439836	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62439837	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62439840	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62439842	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62439843	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62441279	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62441284	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62441303	0.83[EUR][1000 genomes]
rs66516768	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6913486	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7381555	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7450246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7740278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7740784	0.81[EUR][1000 genomes]
rs7744015	0.82[EUR][1000 genomes]
rs7752594	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7753812	0.95[CEU][hapmap];0.87[CHB][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7754399	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7767622	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7818	0.95[CEU][hapmap];0.87[CHB][hapmap]
rs9027	0.85[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs909792	0.81[CHB][hapmap]
rs9285521	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9285522	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9285523	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9285524	0.95[CEU][hapmap];0.87[CHB][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9286597	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9322184	0.81[CHB][hapmap]
rs9322188	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9322189	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9322190	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322192	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322193	0.91[CEU][hapmap];0.87[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322194	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9322196	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322197	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9322198	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322199	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322203	0.82[ASN][1000 genomes]
rs9322204	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322206	0.95[CEU][hapmap];0.80[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9322207	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322208	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9322209	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322210	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9322214	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9322215	0.89[EUR][1000 genomes]
rs9322217	0.83[EUR][1000 genomes]
rs9322218	0.95[CEU][hapmap];0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs9322219	0.91[CEU][hapmap];0.87[CHB][hapmap];0.82[EUR][1000 genomes]
rs9322220	0.84[EUR][1000 genomes]
rs9322221	0.83[EUR][1000 genomes]
rs933055	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs9371199	0.81[EUR][1000 genomes]
rs9372044	0.96[CEU][hapmap];0.87[CHB][hapmap];0.82[EUR][1000 genomes]
rs9377223	0.81[CHB][hapmap]
rs9377224	0.86[CHB][hapmap]
rs9377228	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9377229	0.91[CEU][hapmap];0.87[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9379314	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9379348	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9383812	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9383844	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9393132	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9393175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9397357	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs9399689	0.81[CHB][hapmap]
rs9399692	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9399693	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9404047	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9404048	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9406286	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9406345	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9406346	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9478291	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs9479094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9479494	0.93[EUR][1000 genomes]
rs9479808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs9479810	0.95[CEU][hapmap];0.86[CHB][hapmap];0.88[EUR][1000 genomes]
rs9480009	0.91[EUR][1000 genomes]
rs9480031	0.91[EUR][1000 genomes]
rs9485405	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9485408	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9498368	0.81[CHB][hapmap]
rs9498382	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9498383	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9498384	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9505823	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9505824	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9505826	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9505967	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9505972	0.86[EUR][1000 genomes]
rs9505974	0.96[CEU][hapmap];0.87[CHB][hapmap];0.81[EUR][1000 genomes]
rs9505982	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9505983	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs952165	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs9688350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688412	0.95[CEU][hapmap];0.87[CHB][hapmap]
rs9688452	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9688517	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688699	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688750	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9688794	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9688803	0.80[EUR][1000 genomes]
rs9688809	0.81[EUR][1000 genomes]
rs9688858	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9688861	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9688867	0.82[EUR][1000 genomes]
rs9688902	0.80[EUR][1000 genomes]
rs9688938	0.81[EUR][1000 genomes]
rs9688940	0.81[EUR][1000 genomes]
rs9689036	0.96[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs9689084	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9689242	0.81[EUR][1000 genomes]
rs9689269	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs9689340	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9689599	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9689694	0.81[EUR][1000 genomes]
rs9689702	0.94[CHB][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9689716	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9689723	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9717327	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9718079	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9765929	0.83[EUR][1000 genomes]
rs9765965	0.82[EUR][1000 genomes]
rs9766004	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9766037	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9766214	0.82[EUR][1000 genomes]
rs9766444	0.82[EUR][1000 genomes]
rs9766525	0.84[EUR][1000 genomes]
rs9766562	0.92[CEU][hapmap];0.87[CHB][hapmap]
rs9766886	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9767077	0.80[EUR][1000 genomes]
rs9767105	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9767113	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9767122	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs9767123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9767309	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9767554	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9767555	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9767652	0.93[EUR][1000 genomes]
rs9767713	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9767727	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9800580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9800603	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9800614	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9800686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9800736	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9800806	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9800871	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9968911	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1794633	chr6:149903597-149944908	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs9377230	GINM1	cis	Whole Blood	GTEx
rs9377230	NUP43	cis	Whole Blood	GTEx
rs9377230	RP11-350J20.9	cis	Esophagus Mucosa	GTEx
rs9377230	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs9377230	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs9377230	RP11-350J20.5	cis	Artery Aorta	GTEx
rs9377230	RP11-350J20.5	cis	Thyroid	GTEx
rs9377230	RP11-350J20.5	cis	lung	GTEx
rs9377230	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs9377230	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs9377230	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs9377230	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs9377230	RP11-350J20.5	cis	Artery Tibial	GTEx
rs9377230	RAET1G	cis	Thyroid	GTEx

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149909000-149935000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:149910000-149935200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:149915200-149935000	Weak transcription	Small Intestine	intestine
4	chr6:149915600-149935200	Weak transcription	Esophagus	oesophagus
5	chr6:149915600-149968400	Weak transcription	Pancreas	Pancrea
6	chr6:149915600-149969200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:149915800-149934800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:149915800-149969200	Weak transcription	Gastric	stomach
9	chr6:149916000-149935000	Weak transcription	Spleen	Spleen
10	chr6:149916000-149943000	Weak transcription	Colonic Mucosa	Colon
11	chr6:149916400-149950200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:149917600-149934800	Weak transcription	Psoas Muscle	Psoas
13	chr6:149918400-149935400	Weak transcription	HMEC	breast
14	chr6:149918400-149950200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:149918800-149934800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:149918800-149934800	Weak transcription	Brain Substantia Nigra	brain
17	chr6:149918800-149967600	Weak transcription	HUVEC	blood vessel
18	chr6:149918800-149967600	Weak transcription	NHLF	lung
19	chr6:149919000-149943000	Weak transcription	NHDF-Ad	bronchial
20	chr6:149919200-149935000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:149919400-149934800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:149919400-149940600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:149919400-149949000	Weak transcription	Osteobl	bone
24	chr6:149919600-149935000	Weak transcription	Lung	lung
25	chr6:149919800-149934800	Weak transcription	Ovary	ovary
26	chr6:149919800-149935000	Weak transcription	Aorta	Aorta
27	chr6:149920400-149940200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:149920800-149935000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:149920800-149935000	Weak transcription	Left Ventricle	heart
30	chr6:149921000-149944000	Weak transcription	HSMMtube	muscle
31	chr6:149922000-149934800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:149923000-149935000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:149923000-149941000	Weak transcription	HSMM	muscle
34	chr6:149923000-149943000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:149923000-149952200	Weak transcription	NH-A	brain
36	chr6:149923200-149942800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:149923400-149935000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:149923400-149947600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:149924800-149934800	Weak transcription	Brain Angular Gyrus	brain
40	chr6:149924800-149934800	Weak transcription	Fetal Heart	heart
41	chr6:149924800-149941000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:149924800-149967400	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:149924800-149968000	Weak transcription	Fetal Kidney	kidney
44	chr6:149925000-149934800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:149925000-149935000	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr6:149925000-149937000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:149925200-149934800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:149925200-149943400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr6:149925200-149967000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:149925600-149934800	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links