Variant report

Variant	rs10782316
Chromosome Location	chr6:150073891-150073892
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:61)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:150073700-150074246	HepG2	liver:	n/a	n/a
2	CEBPB	chr6:150073854-150074270	K562	blood:	n/a	chr6:150074109-150074120 chr6:150074109-150074120 chr6:150074001-150074012
3	POLR2A	chr6:150073735-150073924	MCF10A-Er-Src	breast:	n/a	n/a
4	CEBPB	chr6:150073755-150074269	HepG2	liver:	n/a	chr6:150074109-150074120 chr6:150074109-150074120 chr6:150074001-150074012
5	STAT3	chr6:150073725-150074065	MCF10A-Er-Src	breast:	n/a	n/a
6	MYC	chr6:150073785-150074080	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr6:150073816-150074039	MCF10A-Er-Src	breast:	n/a	n/a
8	POLR2A	chr6:150073846-150074294	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr6:150073820-150074002	MCF10A-Er-Src	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:150073879-150073929	A549	lung:	n/a
2	chr6:150073879-150073929	Caco-2	colon:	n/a
3	chr6:150073879-150073929	HPAEpiC	pulmonary alveolar:	n/a
4	chr6:150073879-150073929	SAEC	small airway:	n/a
5	chr6:150073879-150073929	BE2_C	brain:	n/a
6	chr6:150073879-150073929	HCM	heart:	n/a
7	chr6:150073879-150073929	H1-hESC	embryonic stem cell:	embryo
8	chr6:150073879-150073929	ProgFib	skin:	n/a
9	chr6:150073879-150073929	HRE	kidney:	n/a
10	chr6:150073879-150073929	CMK	blood:	n/a
11	chr6:150073879-150073929	GM12878	blood:	n/a
12	chr6:150073879-150073929	SK-N-SH_RA	brain:	n/a
13	chr6:150073879-150073929	NHDF-neo	bronchial:	n/a
14	chr6:150073879-150073929	HIPEpiC	eye:	n/a
15	chr6:150073879-150073929	ovcar-3	ovarian:	n/a
16	chr6:150073879-150073929	HRCEpiC	kidney:	n/a
17	chr6:150073879-150073929	IMR90	lung:	fetal
18	chr6:150073879-150073929	K562	blood:	n/a
19	chr6:150073879-150073929	SK-N-MC	brain:	n/a
20	chr6:150073879-150073929	U87	brain:	n/a
21	chr6:150073879-150073929	HCPEpiC	choroid plexus:	n/a
22	chr6:150073879-150073929	GM06990	blood:	n/a
23	chr6:150073879-150073929	AoSMC	blood vessel:	n/a
24	chr6:150073879-150073929	NT2-D1	testis:	n/a
25	chr6:150073879-150073929	PANC-1	pancreas:	n/a
26	chr6:150073879-150073929	T-47D	breast:	n/a
27	chr6:150073879-150073929	AG04449	skin:	fetal
28	chr6:150073879-150073929	AG04450	lung:	fetal
29	chr6:150073879-150073929	AG09309	skin:	n/a
30	chr6:150073879-150073929	BJ	skin:	n/a
31	chr6:150073879-150073929	Hepatocyte	liver:	n/a
32	chr6:150073879-150073929	HUVEC	blood vessel:	n/a
33	chr6:150073879-150073929	HMEC	breast:	n/a
34	chr6:150073879-150073929	NHBE	bronchial:	n/a
35	chr6:150073879-150073929	HCF	heart:	n/a
36	chr6:150073879-150073929	LNCaP	prostate:	n/a
37	chr6:150073879-150073929	ECC-1	luminal epithelium:	n/a
38	chr6:150073879-150073929	GM12892	blood:	n/a
39	chr6:150073879-150073929	NB4	blood:	n/a
40	chr6:150073879-150073929	RPTEC	kidney:	n/a
41	chr6:150073879-150073929	Jurkat	blood:	n/a
42	chr6:150073879-150073929	HL-60	blood:	n/a
43	chr6:150073879-150073929	Hela-S3	cervix:	n/a
44	chr6:150073879-150073929	HNPCEpiC	eye:	n/a
45	chr6:150073879-150073929	HCT-116	colon:	n/a
46	chr6:150073879-150073929	PFSK-1	brain:	n/a
47	chr6:150073879-150073929	PrEC	prostate:	n/a
48	chr6:150073879-150073929	HEK293	kidney:	embryo
49	chr6:150073879-150073929	AG09319	gingival:	n/a
50	chr6:150073879-150073929	HepG2	liver:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150071379..150074045-chr6:150185232..150187132,2	MCF-7	breast:
2	chr6:150071337..150080563-chr6:150080588..150087592,16	K562	blood:
3	chr6:150073818..150075342-chr6:150092909..150094549,2	K562	blood:
4	chr6:150072577..150074857-chr6:150088805..150091239,2	K562	blood:
5	chr6:150037162..150039500-chr6:150073081..150075697,2	K562	blood:

No data

Variant related genes	Relation type
NUP43	TF binding region
NUP43	CpG island
ENSG00000131023	Chromatin interaction
ENSG00000120256	Chromatin interaction

Extended variants
information (count: 358 )
Associated
traits (count: 25 )

rSNPs within LD-proxies of this variant (count:353)

rs_ID	r²[population]
rs10214845	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10452626	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10457850	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10457851	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10747275	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10747276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10782310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782311	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782313	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782314	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782315	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782317	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080670	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10872643	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10872644	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872645	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10872646	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872647	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs10872648	0.95[EUR][1000 genomes]
rs10872649	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10872650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10872651	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10872652	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10872653	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10872656	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs1108889	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[TSI][hapmap]
rs1112729	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1112730	0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11155662	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11155668	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11155669	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11155670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11155671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11155674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11155675	0.93[EUR][1000 genomes]
rs11155676	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11155677	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11155679	0.95[EUR][1000 genomes]
rs11155680	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11155681	0.85[EUR][1000 genomes]
rs11155682	0.86[EUR][1000 genomes]
rs11155683	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11155685	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11155689	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs1125	0.95[CEU][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs11968921	0.83[EUR][1000 genomes]
rs12111376	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12174349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12174716	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12175504	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12175575	0.91[EUR][1000 genomes]
rs12176034	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs12178310	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12179031	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12182220	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12183664	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12191643	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12193364	0.87[EUR][1000 genomes]
rs12195866	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12200670	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12201033	0.91[EUR][1000 genomes]
rs12203703	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12205092	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12206402	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12210605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12211511	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12213779	0.91[EUR][1000 genomes]
rs12234128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs12523793	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12525871	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12526675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528279	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529698	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12660304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662162	0.90[EUR][1000 genomes]
rs12662174	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13215691	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1413654	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1413655	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs1572229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs17672976	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17673294	0.85[EUR][1000 genomes]
rs17745062	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1889473	0.84[EUR][1000 genomes]
rs1934534	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1984111	0.84[EUR][1000 genomes]
rs2064520	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2064521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2065663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2065664	0.95[CEU][hapmap];0.80[CHB][hapmap];0.88[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2095375	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs2144207	0.81[EUR][1000 genomes]
rs2151909	0.85[EUR][1000 genomes]
rs2151912	0.84[EUR][1000 genomes]
rs2151913	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs2184369	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2184370	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2185352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2275045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2275046	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs2297928	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2297930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2297932	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2342764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs2342765	0.95[CEU][hapmap];0.89[TSI][hapmap]
rs2342857	0.86[EUR][1000 genomes]
rs2342858	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs2342860	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2342861	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2880435	0.83[EUR][1000 genomes]
rs2880436	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs34157004	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34337297	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35031906	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35443312	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35763894	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35830138	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35961297	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35967444	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3734295	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3763161	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763162	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs3763163	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs3777949	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3798761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3805748	0.90[EUR][1000 genomes]
rs3805749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3805750	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3805751	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3805752	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3805753	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3828700	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3924871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4039600	0.89[EUR][1000 genomes]
rs4242279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4354168	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4380763	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4421206	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4455682	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4552	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs4642491	0.90[EUR][1000 genomes]
rs4816	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4869730	0.86[EUR][1000 genomes]
rs4869731	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs4869750	0.95[CEU][hapmap];0.89[TSI][hapmap]
rs4869812	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4869923	0.80[EUR][1000 genomes]
rs4869966	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4870015	0.84[EUR][1000 genomes]
rs4870019	0.85[EUR][1000 genomes]
rs4870020	0.85[EUR][1000 genomes]
rs4870048	0.84[EUR][1000 genomes]
rs4870049	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4870050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4870052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs4870054	0.95[CEU][hapmap];0.91[TSI][hapmap]
rs4870139	0.89[EUR][1000 genomes]
rs4870144	0.90[EUR][1000 genomes]
rs4870267	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4870388	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870493	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4870509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4870529	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55763431	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55849538	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55938765	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55993747	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56091542	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56103941	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56374774	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56397000	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57938011	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58189451	0.87[EUR][1000 genomes]
rs60424881	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62439811	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62439836	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62439837	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62439840	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62439842	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62439843	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62441279	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62441284	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62441303	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62441335	0.86[EUR][1000 genomes]
rs6420132	0.84[EUR][1000 genomes]
rs66516768	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6899661	0.86[EUR][1000 genomes]
rs6903998	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs6913486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6914319	0.86[EUR][1000 genomes]
rs6936395	0.86[EUR][1000 genomes]
rs7381555	0.85[EUR][1000 genomes]
rs7450246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7738696	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs7740278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7740784	0.89[EUR][1000 genomes]
rs7744015	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7744105	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[TSI][hapmap]
rs7745915	0.84[EUR][1000 genomes]
rs7752089	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7752594	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7753812	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7754399	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7764846	0.85[EUR][1000 genomes]
rs7767622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7769115	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[TSI][hapmap]
rs7818	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs868375	0.95[CEU][hapmap]
rs880245	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[TSI][hapmap]
rs880246	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs9027	0.85[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs9285521	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs9285522	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9285523	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9285524	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9285525	0.84[EUR][1000 genomes]
rs9286597	0.81[EUR][1000 genomes]
rs9322188	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs9322189	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs9322190	0.80[EUR][1000 genomes]
rs9322192	0.85[EUR][1000 genomes]
rs9322193	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs9322194	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322196	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322197	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322199	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322204	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322206	0.95[CEU][hapmap];0.80[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322207	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9322208	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9322209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9322210	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322215	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322217	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9322218	0.95[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322219	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322220	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322221	0.91[EUR][1000 genomes]
rs9322223	0.84[EUR][1000 genomes]
rs9322224	0.84[EUR][1000 genomes]
rs933055	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs9371199	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9371201	0.95[CEU][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs9371486	0.84[EUR][1000 genomes]
rs9372044	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9377228	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9377229	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9377230	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9379314	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9379348	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9383546	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs9383812	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9383844	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9393132	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9393175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9397022	0.86[EUR][1000 genomes]
rs9397357	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs9399692	0.84[EUR][1000 genomes]
rs9399693	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9404047	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9404048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9406286	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9406345	0.91[EUR][1000 genomes]
rs9406346	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9478291	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.99[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9478848	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs9479094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479494	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9479808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9479810	0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480009	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9480031	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9485405	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9485408	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9498382	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9498384	0.89[EUR][1000 genomes]
rs9505823	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9505824	0.93[EUR][1000 genomes]
rs9505826	0.89[EUR][1000 genomes]
rs9505967	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9505972	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9505974	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9505975	0.86[EUR][1000 genomes]
rs9505982	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9505983	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs952165	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs952166	0.84[EUR][1000 genomes]
rs958953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9688350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688412	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs9688452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9688517	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688750	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9688794	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9688803	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688809	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688858	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9688861	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9688867	0.90[EUR][1000 genomes]
rs9688897	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688902	0.88[EUR][1000 genomes]
rs9688938	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688940	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9689025	0.86[EUR][1000 genomes]
rs9689036	0.95[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9689084	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9689242	0.89[EUR][1000 genomes]
rs9689269	0.91[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9689340	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689447	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9689599	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9689694	0.89[EUR][1000 genomes]
rs9689702	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689716	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9689723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9717327	0.88[EUR][1000 genomes]
rs9718079	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9765861	0.86[EUR][1000 genomes]
rs9765929	0.91[EUR][1000 genomes]
rs9765965	0.90[EUR][1000 genomes]
rs9766004	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9766037	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9766214	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9766444	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9766525	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9766562	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9766886	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9767077	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9767105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9767113	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9767122	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9767123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9767192	0.84[EUR][1000 genomes]
rs9767309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9767554	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9767555	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9767652	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9767713	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9767727	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9800580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9800603	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9800614	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9800686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs9800736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9800806	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9800871	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9968911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:25)

SNP	Gene	Cis/trans	Tissue	Source
rs10782316	FBXO30	cis	cerebellum	SCAN
rs10782316	LRP11	cis	cerebellum	SCAN
rs10782316	PPIL4	cis	cerebellum	SCAN
rs10782316	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs10782316	LATS1	cis	cerebellum	SCAN
rs10782316	RAET1G	cis	Thyroid	GTEx
rs10782316	LRP11	cis	parietal	SCAN
rs10782316	RP11-350J20.5	cis	lung	GTEx
rs10782316	RP11-350J20.5	cis	Artery Tibial	GTEx
rs10782316	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs10782316	RP11-350J20.5	cis	Artery Aorta	GTEx
rs10782316	RAET1G	cis	Artery Tibial	GTEx
rs10782316	NUP43	cis	Whole Blood	GTEx
rs10782316	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs10782316	GINM1	cis	Whole Blood	GTEx
rs10782316	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs10782316	LATS1	cis	parietal	SCAN
rs10782316	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs10782316	RMND1	cis	cerebellum	SCAN
rs10782316	RP11-350J20.9	cis	Esophagus Mucosa	GTEx
rs10782316	PCMT1	cis	Esophagus Muscularis	GTEx
rs10782316	RP11-350J20.5	cis	Nerve Tibial	GTEx
rs10782316	PPIL4	cis	parietal	SCAN
rs10782316	RP11-350J20.5	cis	Thyroid	GTEx
rs10782316	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150071600-150075200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr6:150071800-150074000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:150071800-150074200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:150071800-150081200	Weak transcription	Spleen	Spleen
5	chr6:150071800-150092600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:150071800-150092800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:150071800-150100200	Weak transcription	Gastric	stomach
8	chr6:150072000-150074000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:150072000-150074000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:150072000-150074000	Enhancers	Adipose Nuclei	Adipose
11	chr6:150072000-150074800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:150072000-150075000	Enhancers	Liver	Liver
13	chr6:150072000-150075600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:150072000-150076600	Weak transcription	Fetal Intestine Small	intestine
15	chr6:150072000-150081000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:150072000-150081200	Weak transcription	Placenta	Placenta
17	chr6:150072000-150081600	Weak transcription	Fetal Stomach	stomach
18	chr6:150072000-150086800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:150072000-150087000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:150072000-150087200	Weak transcription	Stomach Mucosa	stomach
21	chr6:150072000-150094200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr6:150072000-150111000	Weak transcription	Fetal Kidney	kidney
23	chr6:150072000-150152000	Weak transcription	Aorta	Aorta
24	chr6:150072200-150074000	Enhancers	Primary hematopoietic stem cells	blood
25	chr6:150072200-150074000	Enhancers	Thymus	Thymus
26	chr6:150072200-150075200	Weak transcription	Brain Substantia Nigra	brain
27	chr6:150072200-150075600	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:150072200-150075800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:150072200-150076200	Weak transcription	Right Atrium	heart
30	chr6:150072200-150076800	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:150072200-150077000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr6:150072200-150080800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr6:150072200-150081000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:150072200-150081000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:150072200-150081200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:150072200-150087000	Weak transcription	Fetal Lung	lung
37	chr6:150072200-150087200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:150072200-150087200	Weak transcription	Primary T cells from cord blood	blood
39	chr6:150072200-150087200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:150072200-150087200	Weak transcription	NH-A	brain
41	chr6:150072400-150074000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:150072400-150074000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr6:150072400-150074200	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr6:150072400-150075000	Weak transcription	Brain Anterior Caudate	brain
45	chr6:150072400-150075800	Weak transcription	Pancreas	Pancrea
46	chr6:150072400-150075800	Weak transcription	Right Ventricle	heart
47	chr6:150072400-150076200	Weak transcription	Primary B cells from peripheral blood	blood
48	chr6:150072400-150076400	Weak transcription	Fetal Heart	heart
49	chr6:150072400-150076400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr6:150072400-150076800	Weak transcription	NHDF-Ad	bronchial

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Variant report

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