Variant report

Variant	rs1080670
Chromosome Location	chr6:149941297-149941298
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149938577..149941388-chr6:149968013..149970369,3	K562	blood:
2	chr6:149937486..149939653-chr6:149940555..149942084,2	MCF-7	breast:
3	chr6:149866333..149869033-chr6:149939883..149942765,2	K562	blood:

Variant related genes	Relation type
ENSG00000131013	Chromatin interaction
ENSG00000186625	Chromatin interaction

Extended variants
information (count: 285 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:280)

rs_ID	r²[population]
rs10214845	0.84[EUR][1000 genomes]
rs10452626	0.83[EUR][1000 genomes]
rs10457850	0.83[EUR][1000 genomes]
rs10457851	0.83[EUR][1000 genomes]
rs10747275	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10747276	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10782310	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782311	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782312	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782313	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782314	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782315	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782316	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782317	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782318	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10872643	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10872644	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10872645	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10872646	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10872647	0.90[EUR][1000 genomes]
rs10872648	0.90[EUR][1000 genomes]
rs10872649	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872650	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872651	0.86[EUR][1000 genomes]
rs10872652	0.83[EUR][1000 genomes]
rs10872653	0.81[EUR][1000 genomes]
rs1112729	0.83[EUR][1000 genomes]
rs1112730	0.83[EUR][1000 genomes]
rs11155662	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11155668	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155669	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155670	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11155671	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11155674	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11155675	0.90[EUR][1000 genomes]
rs11155676	0.86[EUR][1000 genomes]
rs11155677	0.90[EUR][1000 genomes]
rs11155679	0.89[EUR][1000 genomes]
rs11155680	0.86[EUR][1000 genomes]
rs11155683	0.82[EUR][1000 genomes]
rs11155685	0.82[EUR][1000 genomes]
rs1125	0.93[EUR][1000 genomes]
rs12111376	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12174349	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12174716	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12175504	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12175575	0.83[EUR][1000 genomes]
rs12178310	0.91[EUR][1000 genomes]
rs12179031	0.81[EUR][1000 genomes]
rs12183664	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12191643	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193364	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12195866	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12200670	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12201033	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12203703	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12205092	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12206402	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12210605	0.81[EUR][1000 genomes]
rs12211511	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12213779	0.83[EUR][1000 genomes]
rs12234128	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12523793	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12525871	0.83[EUR][1000 genomes]
rs12526675	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12528279	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12529698	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12660304	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12662162	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12662174	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1413654	0.84[EUR][1000 genomes]
rs17672976	0.83[EUR][1000 genomes]
rs17745062	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1934534	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2064520	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2064521	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2065663	0.92[EUR][1000 genomes]
rs2065664	0.85[EUR][1000 genomes]
rs2144207	0.84[EUR][1000 genomes]
rs2184369	0.82[EUR][1000 genomes]
rs2185352	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2297928	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2297930	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2297932	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2342764	0.81[EUR][1000 genomes]
rs2342860	0.82[EUR][1000 genomes]
rs2342861	0.82[EUR][1000 genomes]
rs34157004	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34337297	0.91[EUR][1000 genomes]
rs35031906	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35443312	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35763894	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35830138	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35961297	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35967444	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3734295	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3763161	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3777949	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3798761	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3805748	0.83[EUR][1000 genomes]
rs3805749	0.85[EUR][1000 genomes]
rs3805752	0.81[EUR][1000 genomes]
rs3924871	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4039600	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4242279	0.81[EUR][1000 genomes]
rs4354168	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4380763	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4421206	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4455682	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4642491	0.82[EUR][1000 genomes]
rs4869812	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4869923	0.83[EUR][1000 genomes]
rs4869966	0.83[EUR][1000 genomes]
rs4870049	0.81[EUR][1000 genomes]
rs4870050	0.82[EUR][1000 genomes]
rs4870052	0.81[EUR][1000 genomes]
rs4870139	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4870144	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870267	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4870388	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4870493	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4870509	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4870529	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55763431	0.82[EUR][1000 genomes]
rs55849538	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55938765	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55993747	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56091542	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56103941	0.81[EUR][1000 genomes]
rs56374774	0.82[EUR][1000 genomes]
rs56397000	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57938011	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58189451	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60424881	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62439782	0.81[AMR][1000 genomes]
rs62439784	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62439811	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62439836	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62439837	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62439840	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62439842	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62439843	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62441279	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62441284	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62441303	0.83[EUR][1000 genomes]
rs66516768	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6913486	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7381555	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7450246	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7740278	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7740784	0.81[EUR][1000 genomes]
rs7744015	0.82[EUR][1000 genomes]
rs7752089	0.81[EUR][1000 genomes]
rs7752594	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7753812	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7754399	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7767622	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9027	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9285521	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9285522	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9285523	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9285524	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9286597	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9322188	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322189	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322190	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322192	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322193	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322194	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322196	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322197	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322198	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322199	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322200	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322203	0.85[ASN][1000 genomes]
rs9322204	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322206	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322207	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322208	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322209	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9322210	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322214	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9322215	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322217	0.84[EUR][1000 genomes]
rs9322218	0.81[EUR][1000 genomes]
rs9322219	0.82[EUR][1000 genomes]
rs9322220	0.84[EUR][1000 genomes]
rs9322221	0.84[EUR][1000 genomes]
rs9371199	0.81[EUR][1000 genomes]
rs9372044	0.82[EUR][1000 genomes]
rs9377228	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9377229	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9377230	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9379314	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9379348	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383812	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9383844	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9393132	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9393175	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9399692	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9399693	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9404047	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9404048	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9406286	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9406345	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9406346	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9478291	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9479094	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9479494	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9479808	0.84[EUR][1000 genomes]
rs9479810	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9480009	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9480031	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9485405	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9485408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498382	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9498383	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9498384	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9505823	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9505824	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9505826	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9505967	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9505972	0.86[EUR][1000 genomes]
rs9505974	0.81[EUR][1000 genomes]
rs9505982	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9505983	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9688350	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9688452	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9688517	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9688699	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9688750	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9688794	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688803	0.81[EUR][1000 genomes]
rs9688809	0.81[EUR][1000 genomes]
rs9688858	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9688861	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9688867	0.82[EUR][1000 genomes]
rs9688897	0.80[EUR][1000 genomes]
rs9688902	0.81[EUR][1000 genomes]
rs9688938	0.81[EUR][1000 genomes]
rs9688940	0.81[EUR][1000 genomes]
rs9689036	0.81[EUR][1000 genomes]
rs9689084	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9689242	0.81[EUR][1000 genomes]
rs9689340	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9689599	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689694	0.81[EUR][1000 genomes]
rs9689702	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9689716	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9689723	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9717327	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9718079	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9765929	0.83[EUR][1000 genomes]
rs9765965	0.83[EUR][1000 genomes]
rs9766004	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9766037	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9766214	0.83[EUR][1000 genomes]
rs9766444	0.83[EUR][1000 genomes]
rs9766525	0.84[EUR][1000 genomes]
rs9766562	0.80[EUR][1000 genomes]
rs9766886	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767077	0.81[EUR][1000 genomes]
rs9767105	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9767113	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9767122	0.84[EUR][1000 genomes]
rs9767123	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9767309	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9767554	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767555	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9767652	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9767713	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9767727	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9800580	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9800603	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9800614	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9800686	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9800736	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9800806	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9800871	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9968911	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1794633	chr6:149903597-149944908	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs1080670	RP11-350J20.5	cis	Artery Aorta	GTEx
rs1080670	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs1080670	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs1080670	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs1080670	RP11-350J20.5	cis	Artery Tibial	GTEx
rs1080670	GINM1	cis	Whole Blood	GTEx
rs1080670	RP11-350J20.5	cis	lung	GTEx
rs1080670	RP11-350J20.5	cis	Thyroid	GTEx
rs1080670	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs1080670	NUP43	cis	Whole Blood	GTEx
rs1080670	RP11-350J20.9	cis	Esophagus Mucosa	GTEx
rs1080670	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs1080670	RAET1G	cis	Thyroid	GTEx
rs1080670	NUP43	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149915600-149968400	Weak transcription	Pancreas	Pancrea
2	chr6:149915600-149969200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:149915800-149969200	Weak transcription	Gastric	stomach
4	chr6:149916000-149943000	Weak transcription	Colonic Mucosa	Colon
5	chr6:149916400-149950200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:149918400-149950200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:149918800-149967600	Weak transcription	HUVEC	blood vessel
8	chr6:149918800-149967600	Weak transcription	NHLF	lung
9	chr6:149919000-149943000	Weak transcription	NHDF-Ad	bronchial
10	chr6:149919400-149949000	Weak transcription	Osteobl	bone
11	chr6:149921000-149944000	Weak transcription	HSMMtube	muscle
12	chr6:149923000-149943000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:149923000-149952200	Weak transcription	NH-A	brain
14	chr6:149923200-149942800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:149923400-149947600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:149924800-149967400	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:149924800-149968000	Weak transcription	Fetal Kidney	kidney
18	chr6:149925200-149943400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:149925200-149967000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:149930400-149942000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:149930600-149944000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:149935000-149967000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:149935200-149959200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:149935200-149966200	Weak transcription	Hela-S3	cervix
25	chr6:149935200-149967800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:149935200-149968000	Weak transcription	Brain Angular Gyrus	brain
27	chr6:149935200-149969000	Weak transcription	Small Intestine	intestine
28	chr6:149935400-149944000	Weak transcription	Spleen	Spleen
29	chr6:149935400-149948200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:149935400-149948800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:149935400-149948800	Weak transcription	Psoas Muscle	Psoas
32	chr6:149935400-149958200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:149935400-149968000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr6:149935600-149948400	Weak transcription	Brain Anterior Caudate	brain
35	chr6:149935600-149968000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:149935600-149968400	Weak transcription	Esophagus	oesophagus
37	chr6:149935800-149941600	Weak transcription	K562	blood
38	chr6:149935800-149942600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:149935800-149943400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr6:149935800-149944000	Weak transcription	HepG2	liver
41	chr6:149935800-149968600	Weak transcription	Aorta	Aorta
42	chr6:149936000-149948800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:149936000-149967000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr6:149936000-149967200	Weak transcription	HMEC	breast
45	chr6:149936000-149968000	Weak transcription	Right Ventricle	heart
46	chr6:149936200-149943000	Weak transcription	NHEK	skin
47	chr6:149936200-149948800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:149936600-149942800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:149936800-149942000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:149936800-149969000	Weak transcription	Lung	lung

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