Variant report

Variant	rs9404047
Chromosome Location	chr6:149929174-149929175
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149927260..149929219-chr6:149933364..149935307,2	MCF-7	breast:
2	chr6:149928230..149930786-chr6:149943944..149945512,2	K562	blood:
3	chr6:149921558..149923711-chr6:149928305..149931227,2	K562	blood:
4	chr6:149924500..149926478-chr6:149928275..149931154,2	K562	blood:

Variant related genes	Relation type
ENSG00000186625	Chromatin interaction

Extended variants
information (count: 257 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:252)

rs_ID	r²[population]
rs10214845	0.82[EUR][1000 genomes]
rs10452626	0.81[EUR][1000 genomes]
rs10457850	0.81[EUR][1000 genomes]
rs10457851	0.81[EUR][1000 genomes]
rs10747275	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10747276	0.90[EUR][1000 genomes]
rs10782310	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10782311	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10782312	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10782313	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10782314	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10782315	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10782316	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10782317	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10782318	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1080670	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10872643	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10872644	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10872645	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872646	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10872647	0.87[EUR][1000 genomes]
rs10872648	0.87[EUR][1000 genomes]
rs10872649	0.90[EUR][1000 genomes]
rs10872650	0.90[EUR][1000 genomes]
rs10872651	0.84[EUR][1000 genomes]
rs10872652	0.81[EUR][1000 genomes]
rs1112729	0.81[EUR][1000 genomes]
rs1112730	0.81[EUR][1000 genomes]
rs11155662	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155668	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11155669	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11155670	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11155671	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11155674	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11155675	0.87[EUR][1000 genomes]
rs11155676	0.84[EUR][1000 genomes]
rs11155677	0.88[EUR][1000 genomes]
rs11155679	0.87[EUR][1000 genomes]
rs11155680	0.84[EUR][1000 genomes]
rs11155685	0.80[EUR][1000 genomes]
rs1125	0.91[EUR][1000 genomes]
rs12111376	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12174349	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12174716	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12175504	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12175575	0.81[EUR][1000 genomes]
rs12178310	0.91[EUR][1000 genomes]
rs12183664	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12191643	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12193364	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12195866	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12200670	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12201033	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12203703	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12205092	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12206402	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12211511	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12213779	0.81[EUR][1000 genomes]
rs12234128	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12523793	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12525871	0.81[EUR][1000 genomes]
rs12526675	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12528279	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12529698	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12660304	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12662162	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12662174	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1413654	0.82[EUR][1000 genomes]
rs17672976	0.81[EUR][1000 genomes]
rs17745062	0.87[EUR][1000 genomes]
rs1934534	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2064520	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2064521	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2065663	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2065664	0.83[EUR][1000 genomes]
rs2144207	0.81[EUR][1000 genomes]
rs2184369	0.80[EUR][1000 genomes]
rs2185352	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2297928	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2297930	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2297932	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2342860	0.80[EUR][1000 genomes]
rs2342861	0.80[EUR][1000 genomes]
rs34157004	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34337297	0.89[EUR][1000 genomes]
rs35031906	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35443312	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35763894	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35830138	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35961297	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35967444	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3734295	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3763161	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3777949	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3798761	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3805748	0.81[EUR][1000 genomes]
rs3805749	0.83[EUR][1000 genomes]
rs3924871	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4039600	0.89[EUR][1000 genomes]
rs4354168	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4380763	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4421206	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4455682	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4642491	0.80[EUR][1000 genomes]
rs4869812	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4869923	0.80[EUR][1000 genomes]
rs4869966	0.81[EUR][1000 genomes]
rs4870139	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4870144	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4870267	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4870388	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870493	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4870509	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870529	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55763431	0.80[EUR][1000 genomes]
rs55849538	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55938765	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55993747	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56091542	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56374774	0.80[EUR][1000 genomes]
rs56397000	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57938011	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58189451	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60424881	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62439784	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62439811	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62439836	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62439837	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62439840	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62439842	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62439843	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62441279	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62441284	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62441303	0.81[EUR][1000 genomes]
rs66516768	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6913486	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7381555	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7450246	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7740278	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7744015	0.80[EUR][1000 genomes]
rs7752594	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7753812	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7754399	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7767622	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9027	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9285521	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9285522	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9285523	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9285524	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9286597	0.81[EUR][1000 genomes]
rs9322188	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322189	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322190	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322192	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322193	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322194	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322196	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9322197	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322198	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9322199	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322200	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9322203	0.84[ASN][1000 genomes]
rs9322204	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322206	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322207	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322208	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322209	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9322210	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322214	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322215	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322217	0.83[EUR][1000 genomes]
rs9322219	0.80[EUR][1000 genomes]
rs9322220	0.82[EUR][1000 genomes]
rs9322221	0.82[EUR][1000 genomes]
rs9372044	0.80[EUR][1000 genomes]
rs9377228	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9377229	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9377230	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9379314	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9379348	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383812	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9383844	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9393132	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393175	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9399692	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9399693	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9404048	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9406286	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9406345	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9406346	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9478291	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9479094	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9479494	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9479808	0.82[EUR][1000 genomes]
rs9479810	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9480009	0.90[EUR][1000 genomes]
rs9480031	0.90[EUR][1000 genomes]
rs9485405	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485408	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9498382	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498383	0.84[ASN][1000 genomes]
rs9498384	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9505823	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9505824	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9505826	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9505967	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9505972	0.84[EUR][1000 genomes]
rs9505982	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9505983	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9688350	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9688452	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9688517	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9688699	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9688750	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9688794	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9688858	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9688861	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9688867	0.80[EUR][1000 genomes]
rs9689084	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9689340	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9689599	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9689702	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9689716	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9689723	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9717327	0.89[EUR][1000 genomes]
rs9718079	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9765929	0.81[EUR][1000 genomes]
rs9765965	0.81[EUR][1000 genomes]
rs9766004	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9766037	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9766214	0.81[EUR][1000 genomes]
rs9766444	0.81[EUR][1000 genomes]
rs9766525	0.82[EUR][1000 genomes]
rs9766886	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9767105	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9767113	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9767122	0.82[EUR][1000 genomes]
rs9767123	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9767309	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9767554	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9767555	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9767652	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9767713	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9767727	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9800580	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9800603	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9800614	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9800686	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9800736	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9800806	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9800871	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9968911	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1794633	chr6:149903597-149944908	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs9404047	RP11-350J20.5	cis	Thyroid	GTEx
rs9404047	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs9404047	RP11-350J20.9	cis	Esophagus Mucosa	GTEx
rs9404047	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs9404047	RP11-350J20.5	cis	Artery Tibial	GTEx
rs9404047	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs9404047	RAET1G	cis	Thyroid	GTEx
rs9404047	GINM1	cis	Whole Blood	GTEx
rs9404047	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs9404047	LRP11	cis	Skin Sun Exposed Lower leg	GTEx
rs9404047	RP11-350J20.5	cis	lung	GTEx
rs9404047	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs9404047	NUP43	cis	Whole Blood	GTEx
rs9404047	RP11-350J20.5	cis	Esophagus Mucosa	GTEx

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149889600-149931400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:149899200-149929800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:149909000-149935000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:149910000-149935200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:149915200-149935000	Weak transcription	Small Intestine	intestine
6	chr6:149915600-149935200	Weak transcription	Esophagus	oesophagus
7	chr6:149915600-149968400	Weak transcription	Pancreas	Pancrea
8	chr6:149915600-149969200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:149915800-149934800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:149915800-149969200	Weak transcription	Gastric	stomach
11	chr6:149916000-149935000	Weak transcription	Spleen	Spleen
12	chr6:149916000-149943000	Weak transcription	Colonic Mucosa	Colon
13	chr6:149916400-149934600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:149916400-149950200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:149917600-149934800	Weak transcription	Psoas Muscle	Psoas
16	chr6:149918400-149929600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:149918400-149935400	Weak transcription	HMEC	breast
18	chr6:149918400-149950200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:149918800-149934800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:149918800-149934800	Weak transcription	Brain Substantia Nigra	brain
21	chr6:149918800-149967600	Weak transcription	HUVEC	blood vessel
22	chr6:149918800-149967600	Weak transcription	NHLF	lung
23	chr6:149919000-149943000	Weak transcription	NHDF-Ad	bronchial
24	chr6:149919200-149935000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:149919400-149929600	Weak transcription	GM12878-XiMat	blood
26	chr6:149919400-149934000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:149919400-149934800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:149919400-149940600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:149919400-149949000	Weak transcription	Osteobl	bone
30	chr6:149919600-149935000	Weak transcription	Lung	lung
31	chr6:149919800-149934400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr6:149919800-149934800	Weak transcription	Ovary	ovary
33	chr6:149919800-149935000	Weak transcription	Aorta	Aorta
34	chr6:149920200-149931800	Weak transcription	Right Ventricle	heart
35	chr6:149920400-149940200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:149920600-149934400	Weak transcription	K562	blood
37	chr6:149920800-149935000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:149920800-149935000	Weak transcription	Left Ventricle	heart
39	chr6:149921000-149944000	Weak transcription	HSMMtube	muscle
40	chr6:149921400-149934600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:149922000-149934800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:149922800-149934400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:149923000-149934400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:149923000-149935000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:149923000-149941000	Weak transcription	HSMM	muscle
46	chr6:149923000-149943000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:149923000-149952200	Weak transcription	NH-A	brain
48	chr6:149923200-149942800	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:149923400-149929600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:149923400-149935000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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