Variant report

Variant	rs11155676
Chromosome Location	chr6:150070529-150070530
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:178)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:178 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:150070439-150071808	IMR90	lung:	n/a	n/a
2	POLR2A	chr6:150070499-150071886	K562	blood:	n/a	n/a
3	POLR2A	chr6:150069955-150071803	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr6:150070520-150072115	K562	blood:	n/a	n/a
5	POLR2A	chr6:150070116-150071157	GM12892	blood:	n/a	n/a
6	POLR2A	chr6:150069994-150071556	GM12878	blood:	n/a	n/a
7	SIN3AK20	chr6:150070505-150071833	SK-N-SH	brain:	n/a	n/a
8	POLR2A	chr6:150070432-150071820	HEK293	kidney:	n/a	n/a
9	MAZ	chr6:150070517-150072099	IMR90	lung:	n/a	chr6:150071575-150071585
10	TCF3	chr6:150070458-150071020	GM12878	blood:	n/a	n/a
11	POLR2A	chr6:150070398-150071129	GM12891	blood:	n/a	n/a
12	NR2F2	chr6:150069895-150071857	K562	blood:	n/a	n/a
13	MYBL2	chr6:150069898-150071664	HepG2	liver:	n/a	n/a
14	POLR2A	chr6:150069803-150071775	PANC-1	pancreas:	n/a	n/a
15	POLR2A	chr6:150070428-150071082	A549	lung:	n/a	n/a
16	POLR2A	chr6:150070437-150071564	GM18526	blood:	n/a	n/a
17	YY1	chr6:150070490-150071105	GM12892	blood:	n/a	n/a
18	POU2F2	chr6:150070380-150070957	GM12891	blood:	n/a	n/a
19	BCLAF1	chr6:150070499-150071210	GM12878	blood:	n/a	n/a
20	POLR2A	chr6:150070101-150071663	ProgFib	skin:	n/a	n/a
21	SP1	chr6:150070514-150071012	A549	lung:	n/a	n/a
22	ELF1	chr6:150070497-150071377	GM12878	blood:	n/a	n/a
23	GABPA	chr6:150070491-150071347	K562	blood:	n/a	chr6:150070843-150070854 chr6:150070843-150070852 chr6:150071182-150071191 chr6:150070840-150070854
24	POLR2A	chr6:150070430-150071147	SK-N-SH	brain:	n/a	n/a
25	PML	chr6:150070502-150071822	K562	blood:	n/a	n/a
26	POLR2A	chr6:150069804-150071953	SK-N-MC	brain:	n/a	n/a
27	POLR2A	chr6:150069880-150072065	HepG2	liver:	n/a	n/a
28	SP1	chr6:150070447-150070919	GM12878	blood:	n/a	n/a
29	TAF1	chr6:150070356-150071049	H1-hESC	embryonic stem cell:	n/a	n/a
30	NR2F2	chr6:150070516-150071080	K562	blood:	n/a	n/a
31	POLR2A	chr6:150069971-150071550	HepG2	liver:	n/a	n/a
32	ELF1	chr6:150070499-150071322	K562	blood:	n/a	n/a
33	POLR2A	chr6:150070406-150071528	GM12878	blood:	n/a	n/a
34	POLR2A	chr6:150070361-150071203	A549	lung:	n/a	n/a
35	MAX	chr6:150070499-150071808	K562	blood:	n/a	chr6:150071575-150071585
36	EBF1	chr6:150070477-150070870	GM12878	blood:	n/a	n/a
37	UBTF	chr6:150070527-150071852	K562	blood:	n/a	n/a
38	POLR2A	chr6:150069982-150071657	GM12892	blood:	n/a	n/a
39	TBP	chr6:150070528-150071826	K562	blood:	n/a	n/a
40	POLR2A	chr6:150070376-150071178	U87	brain:	n/a	n/a
41	YY1	chr6:150070528-150071794	K562	blood:	n/a	chr6:150071120-150071134
42	POLR2A	chr6:150069988-150071760	HepG2	liver:	n/a	n/a
43	POLR2A	chr6:150069975-150071142	GM12878	blood:	n/a	n/a
44	POLR2A	chr6:150070284-150071257	Hela-S3	cervix:	n/a	n/a
45	TCF12	chr6:150070514-150070867	HepG2	liver:	n/a	n/a
46	POLR2A	chr6:150069941-150071571	NB4	blood:	n/a	n/a
47	POLR2A	chr6:150070404-150071557	Hela-S3	cervix:	n/a	n/a
48	POLR2A	chr6:150070376-150071132	GM12892	blood:	n/a	n/a
49	TEAD4	chr6:150070492-150071904	K562	blood:	n/a	n/a
50	TAF1	chr6:150070418-150071522	HepG2	liver:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150038744..150042586-chr6:150067819..150072874,7	K562	blood:
2	chr6:149968177..149971048-chr6:150069429..150073118,6	K562	blood:
3	chr6:149967586..149970977-chr6:150068764..150072371,6	K562	blood:
4	chr1:145506973..145507728-chr6:150070463..150070969,2	NB4	blood:
5	chr1:156182487..156183042-chr6:150070450..150071289,2	Hela-S3	cervix:
6	chr6:150038868..150039820-chr6:150070353..150070958,2	MCF-7	breast:
7	chr6:150037915..150040218-chr6:150069685..150072655,4	MCF-7	breast:
8	chr6:150069972..150072484-chr6:150117277..150119937,2	MCF-7	breast:
9	chr6:150036817..150045008-chr6:150066563..150073628,17	MCF-7	breast:

No data

Variant related genes	Relation type
NUP43	TF binding region
PCMT1	TF binding region
ENSG00000131795	Chromatin interaction
ENSG00000234222	Chromatin interaction
ENSG00000260238	Chromatin interaction
ENSG00000186625	Chromatin interaction
ENSG00000160783	Chromatin interaction
ENSG00000231760	Chromatin interaction
ENSG00000131023	Chromatin interaction

Extended variants
information (count: 272 )
Associated
traits (count: 17 )

rSNPs within LD-proxies of this variant (count:267)

rs_ID	r²[population]
rs10214845	0.85[EUR][1000 genomes]
rs10452626	0.84[EUR][1000 genomes]
rs10457850	0.84[EUR][1000 genomes]
rs10457851	0.84[EUR][1000 genomes]
rs10747275	0.86[EUR][1000 genomes]
rs10747276	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782310	0.84[EUR][1000 genomes]
rs10782311	0.86[EUR][1000 genomes]
rs10782312	0.86[EUR][1000 genomes]
rs10782313	0.86[EUR][1000 genomes]
rs10782314	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10782315	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10782316	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10782317	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10782318	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1080670	0.86[EUR][1000 genomes]
rs10872643	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10872644	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10872645	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10872646	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10872647	0.90[EUR][1000 genomes]
rs10872648	0.90[EUR][1000 genomes]
rs10872649	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10872650	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10872651	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10872652	0.84[EUR][1000 genomes]
rs10872653	0.82[EUR][1000 genomes]
rs1112729	0.84[EUR][1000 genomes]
rs1112730	0.84[EUR][1000 genomes]
rs11155668	0.86[EUR][1000 genomes]
rs11155669	0.87[EUR][1000 genomes]
rs11155670	0.87[EUR][1000 genomes]
rs11155671	0.89[EUR][1000 genomes]
rs11155674	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11155675	0.88[EUR][1000 genomes]
rs11155677	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11155679	0.90[EUR][1000 genomes]
rs11155680	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11155683	0.82[EUR][1000 genomes]
rs11155685	0.83[EUR][1000 genomes]
rs1125	0.87[EUR][1000 genomes]
rs12111376	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12174349	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12174716	0.89[EUR][1000 genomes]
rs12175504	0.83[EUR][1000 genomes]
rs12175575	0.84[EUR][1000 genomes]
rs12178310	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12179031	0.84[EUR][1000 genomes]
rs12183664	0.88[EUR][1000 genomes]
rs12191643	0.87[EUR][1000 genomes]
rs12193364	0.81[EUR][1000 genomes]
rs12195866	0.86[EUR][1000 genomes]
rs12200670	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12201033	0.85[EUR][1000 genomes]
rs12203703	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12205092	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12206402	0.88[EUR][1000 genomes]
rs12210605	0.83[EUR][1000 genomes]
rs12211511	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12213779	0.84[EUR][1000 genomes]
rs12523793	0.82[EUR][1000 genomes]
rs12525871	0.84[EUR][1000 genomes]
rs12526675	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12528279	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12529698	0.89[EUR][1000 genomes]
rs12660304	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12662162	0.84[EUR][1000 genomes]
rs12662174	0.87[EUR][1000 genomes]
rs1413654	0.85[EUR][1000 genomes]
rs17672976	0.84[EUR][1000 genomes]
rs17745062	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1934534	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2064520	0.83[EUR][1000 genomes]
rs2064521	0.86[EUR][1000 genomes]
rs2065663	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2065664	0.87[EUR][1000 genomes]
rs2184369	0.83[EUR][1000 genomes]
rs2184370	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2185352	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2275045	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2297928	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2297930	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2297932	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2342764	0.83[EUR][1000 genomes]
rs2342860	0.83[EUR][1000 genomes]
rs2342861	0.83[EUR][1000 genomes]
rs34157004	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34337297	0.85[EUR][1000 genomes]
rs35031906	0.86[EUR][1000 genomes]
rs35443312	0.86[EUR][1000 genomes]
rs35763894	0.86[EUR][1000 genomes]
rs35830138	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35961297	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35967444	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3763161	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3798761	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3805748	0.83[EUR][1000 genomes]
rs3805749	0.85[EUR][1000 genomes]
rs3805752	0.83[EUR][1000 genomes]
rs3924871	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4039600	0.83[EUR][1000 genomes]
rs4242279	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4354168	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4380763	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4421206	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4455682	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4642491	0.83[EUR][1000 genomes]
rs4869812	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4869966	0.84[EUR][1000 genomes]
rs4870049	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4870050	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4870052	0.83[EUR][1000 genomes]
rs4870139	0.83[EUR][1000 genomes]
rs4870144	0.84[EUR][1000 genomes]
rs4870267	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4870388	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4870493	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4870509	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4870529	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55763431	0.83[EUR][1000 genomes]
rs55849538	0.88[EUR][1000 genomes]
rs55938765	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55993747	0.86[EUR][1000 genomes]
rs56091542	0.88[EUR][1000 genomes]
rs56103941	0.83[EUR][1000 genomes]
rs56374774	0.83[EUR][1000 genomes]
rs56397000	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57938011	0.88[EUR][1000 genomes]
rs58189451	0.81[EUR][1000 genomes]
rs60424881	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62439811	0.88[EUR][1000 genomes]
rs62439836	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62439837	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62439840	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62439842	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62439843	0.86[EUR][1000 genomes]
rs62441279	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62441284	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62441303	0.84[EUR][1000 genomes]
rs66516768	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6913486	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7381555	0.81[EUR][1000 genomes]
rs7450246	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7740278	0.88[EUR][1000 genomes]
rs7740784	0.83[EUR][1000 genomes]
rs7744015	0.83[EUR][1000 genomes]
rs7752089	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7752594	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7753812	0.86[EUR][1000 genomes]
rs7754399	0.89[EUR][1000 genomes]
rs7767622	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9285522	0.88[EUR][1000 genomes]
rs9285523	0.85[EUR][1000 genomes]
rs9285524	0.86[EUR][1000 genomes]
rs9322189	0.81[EUR][1000 genomes]
rs9322193	0.80[EUR][1000 genomes]
rs9322196	0.86[EUR][1000 genomes]
rs9322197	0.83[EUR][1000 genomes]
rs9322198	0.86[EUR][1000 genomes]
rs9322200	0.86[EUR][1000 genomes]
rs9322204	0.88[EUR][1000 genomes]
rs9322206	0.84[EUR][1000 genomes]
rs9322207	0.89[EUR][1000 genomes]
rs9322208	0.89[EUR][1000 genomes]
rs9322209	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9322210	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9322214	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322215	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322217	0.82[EUR][1000 genomes]
rs9322218	0.82[EUR][1000 genomes]
rs9322219	0.83[EUR][1000 genomes]
rs9322220	0.85[EUR][1000 genomes]
rs9322221	0.84[EUR][1000 genomes]
rs9371199	0.83[EUR][1000 genomes]
rs9371486	0.80[EUR][1000 genomes]
rs9372044	0.83[EUR][1000 genomes]
rs9377228	0.83[EUR][1000 genomes]
rs9377229	0.80[EUR][1000 genomes]
rs9377230	0.85[EUR][1000 genomes]
rs9379314	0.82[EUR][1000 genomes]
rs9379348	0.86[EUR][1000 genomes]
rs9383812	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383844	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9393132	0.89[EUR][1000 genomes]
rs9393175	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9399693	0.82[EUR][1000 genomes]
rs9404047	0.84[EUR][1000 genomes]
rs9404048	0.86[EUR][1000 genomes]
rs9406286	0.88[EUR][1000 genomes]
rs9406345	0.85[EUR][1000 genomes]
rs9406346	0.88[EUR][1000 genomes]
rs9478291	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9479094	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9479494	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9479808	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9479810	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9480009	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480031	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9485405	0.83[EUR][1000 genomes]
rs9485408	0.86[EUR][1000 genomes]
rs9498382	0.82[EUR][1000 genomes]
rs9498384	0.83[EUR][1000 genomes]
rs9505823	0.87[EUR][1000 genomes]
rs9505824	0.86[EUR][1000 genomes]
rs9505826	0.83[EUR][1000 genomes]
rs9505967	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9505972	0.87[EUR][1000 genomes]
rs9505974	0.83[EUR][1000 genomes]
rs9505982	0.86[EUR][1000 genomes]
rs9505983	0.86[EUR][1000 genomes]
rs958953	0.83[AMR][1000 genomes]
rs9688350	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9688452	0.89[EUR][1000 genomes]
rs9688517	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9688699	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9688750	0.86[EUR][1000 genomes]
rs9688794	0.87[EUR][1000 genomes]
rs9688803	0.82[EUR][1000 genomes]
rs9688809	0.83[EUR][1000 genomes]
rs9688858	0.84[EUR][1000 genomes]
rs9688861	0.88[EUR][1000 genomes]
rs9688867	0.83[EUR][1000 genomes]
rs9688897	0.82[EUR][1000 genomes]
rs9688902	0.82[EUR][1000 genomes]
rs9688938	0.83[EUR][1000 genomes]
rs9688940	0.83[EUR][1000 genomes]
rs9689025	0.80[EUR][1000 genomes]
rs9689036	0.82[EUR][1000 genomes]
rs9689084	0.88[EUR][1000 genomes]
rs9689242	0.83[EUR][1000 genomes]
rs9689340	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9689447	0.81[EUR][1000 genomes]
rs9689599	0.87[EUR][1000 genomes]
rs9689694	0.83[EUR][1000 genomes]
rs9689702	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9689716	0.88[EUR][1000 genomes]
rs9689723	0.88[EUR][1000 genomes]
rs9717327	0.84[EUR][1000 genomes]
rs9718079	0.84[EUR][1000 genomes]
rs9765929	0.84[EUR][1000 genomes]
rs9765965	0.83[EUR][1000 genomes]
rs9766004	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9766037	0.84[EUR][1000 genomes]
rs9766214	0.83[EUR][1000 genomes]
rs9766444	0.83[EUR][1000 genomes]
rs9766525	0.85[EUR][1000 genomes]
rs9766562	0.82[EUR][1000 genomes]
rs9766886	0.88[EUR][1000 genomes]
rs9767077	0.82[EUR][1000 genomes]
rs9767105	0.88[EUR][1000 genomes]
rs9767113	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9767122	0.85[EUR][1000 genomes]
rs9767123	0.89[EUR][1000 genomes]
rs9767309	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9767554	0.85[EUR][1000 genomes]
rs9767555	0.84[EUR][1000 genomes]
rs9767652	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9767713	0.82[EUR][1000 genomes]
rs9767727	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9800580	0.87[EUR][1000 genomes]
rs9800603	0.87[EUR][1000 genomes]
rs9800614	0.89[EUR][1000 genomes]
rs9800686	0.85[EUR][1000 genomes]
rs9800736	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9800806	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9800871	0.89[EUR][1000 genomes]
rs9968911	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:17)

SNP	Gene	Cis/trans	Tissue	Source
rs11155676	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs11155676	NUP43	cis	Whole Blood	GTEx
rs11155676	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs11155676	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs11155676	RP11-350J20.5	cis	Nerve Tibial	GTEx
rs11155676	RP11-350J20.5	cis	Artery Aorta	GTEx
rs11155676	RP11-350J20.5	cis	lung	GTEx
rs11155676	RAET1G	cis	Skin Sun Exposed Lower leg	GTEx
rs11155676	RP11-350J20.5	cis	Thyroid	GTEx
rs11155676	RAET1G	cis	Thyroid	GTEx
rs11155676	RP11-350J20.5	cis	Artery Tibial	GTEx
rs11155676	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs11155676	RP11-350J20.9	cis	Esophagus Mucosa	GTEx
rs11155676	PCMT1	cis	Esophagus Muscularis	GTEx
rs11155676	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs11155676	GINM1	cis	Whole Blood	GTEx
rs11155676	C6orf72	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150067800-150070600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:150067800-150070600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:150067800-150070600	Weak transcription	Gastric	stomach
4	chr6:150067800-150070800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:150068000-150070600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:150068000-150070600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:150068000-150070600	Weak transcription	Aorta	Aorta
8	chr6:150068000-150070600	Weak transcription	Lung	lung
9	chr6:150068000-150070600	Weak transcription	Ovary	ovary
10	chr6:150068000-150070600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:150068000-150070600	Weak transcription	Stomach Mucosa	stomach
12	chr6:150068200-150070600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:150068200-150070600	Weak transcription	Psoas Muscle	Psoas
14	chr6:150068200-150070600	Weak transcription	Small Intestine	intestine
15	chr6:150068200-150070600	Weak transcription	NHDF-Ad	bronchial
16	chr6:150068200-150071000	Weak transcription	Fetal Brain Male	brain
17	chr6:150068400-150070600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:150070000-150070600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:150070000-150070800	Active TSS	Right Atrium	heart
20	chr6:150070000-150071000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr6:150070000-150071000	Active TSS	Brain Germinal Matrix	brain
22	chr6:150070000-150071000	Active TSS	Colonic Mucosa	Colon
23	chr6:150070000-150071000	Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr6:150070000-150071400	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr6:150070000-150071400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:150070000-150071600	Active TSS	Brain Cingulate Gyrus	brain
27	chr6:150070000-150071600	Active TSS	Duodenum Mucosa	Duodenum
28	chr6:150070000-150071600	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr6:150070000-150071600	Active TSS	Fetal Muscle Trunk	muscle
30	chr6:150070000-150071800	Active TSS	Brain Anterior Caudate	brain
31	chr6:150070000-150071800	Active TSS	Fetal Kidney	kidney
32	chr6:150070000-150071800	Active TSS	Osteobl	bone
33	chr6:150070000-150072000	Active TSS	H9 Cell Line	embryonic stem cell
34	chr6:150070000-150072200	Active TSS	iPS-18 Cell Line	embryonic stem cell
35	chr6:150070000-150072200	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr6:150070000-150072400	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr6:150070000-150072400	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr6:150070000-150072400	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr6:150070000-150072600	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr6:150070000-150072600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:150070000-150073000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:150070200-150070600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:150070200-150071000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr6:150070200-150071000	Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr6:150070200-150071000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:150070200-150071000	Active TSS	Fetal Stomach	stomach
47	chr6:150070200-150071000	Active TSS	HepG2	liver
48	chr6:150070200-150071200	Active TSS	Liver	Liver
49	chr6:150070200-150071400	Active TSS	Primary T cells from cord blood	blood
50	chr6:150070200-150071400	Active TSS	Primary T helper naive cells from peripheral blood	blood

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Variant report

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