Variant report

Variant	rs4870049
Chromosome Location	chr6:150158194-150158195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:150158154-150158236	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150157068..150159142-chr6:150224629..150226824,2	MCF-7	breast:
2	chr6:150156036..150158963-chr6:150184147..150187311,3	MCF-7	breast:

Variant related genes	Relation type
LRP11	TF binding region
ENSG00000268592	Chromatin interaction
ENSG00000216906	Chromatin interaction
ENSG00000120256	Chromatin interaction

Extended variants
information (count: 318 )
Associated
traits (count: 18 )

rSNPs within LD-proxies of this variant (count:313)

rs_ID	r²[population]
rs10214845	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10452626	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10457850	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10457851	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10747275	0.81[EUR][1000 genomes]
rs10747276	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10782311	0.81[EUR][1000 genomes]
rs10782312	0.81[EUR][1000 genomes]
rs10782313	0.81[EUR][1000 genomes]
rs10782314	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10782315	0.87[EUR][1000 genomes]
rs10782316	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10782317	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10782318	0.89[EUR][1000 genomes]
rs1080670	0.81[EUR][1000 genomes]
rs10872643	0.85[EUR][1000 genomes]
rs10872644	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10872645	0.83[EUR][1000 genomes]
rs10872646	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10872647	0.84[EUR][1000 genomes]
rs10872648	0.84[EUR][1000 genomes]
rs10872649	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10872650	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10872651	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10872652	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10872653	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10872656	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1108889	0.90[EUR][1000 genomes]
rs1112729	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1112730	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11155668	0.81[EUR][1000 genomes]
rs11155669	0.82[EUR][1000 genomes]
rs11155670	0.82[EUR][1000 genomes]
rs11155671	0.84[EUR][1000 genomes]
rs11155674	0.85[EUR][1000 genomes]
rs11155675	0.83[EUR][1000 genomes]
rs11155676	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11155677	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11155679	0.84[EUR][1000 genomes]
rs11155680	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11155681	0.85[EUR][1000 genomes]
rs11155682	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11155683	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11155685	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11155689	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1125	0.81[EUR][1000 genomes]
rs11968921	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12111376	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12174349	0.87[EUR][1000 genomes]
rs12174716	0.84[EUR][1000 genomes]
rs12175575	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12176034	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12178310	0.85[EUR][1000 genomes]
rs12179031	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12182220	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12183664	0.84[EUR][1000 genomes]
rs12191643	0.82[EUR][1000 genomes]
rs12195866	0.82[EUR][1000 genomes]
rs12200670	0.85[EUR][1000 genomes]
rs12201033	0.80[EUR][1000 genomes]
rs12203703	0.87[EUR][1000 genomes]
rs12205092	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12206402	0.83[EUR][1000 genomes]
rs12210605	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12211511	0.84[EUR][1000 genomes]
rs12213779	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12525871	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12526675	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12528279	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12529698	0.84[EUR][1000 genomes]
rs12660304	0.88[EUR][1000 genomes]
rs12662174	0.82[EUR][1000 genomes]
rs13215691	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1413654	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1413655	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17672976	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17673294	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17745062	0.82[EUR][1000 genomes]
rs1889473	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1934534	0.85[EUR][1000 genomes]
rs1984111	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2064521	0.81[EUR][1000 genomes]
rs2065663	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2065664	0.81[EUR][1000 genomes]
rs2095375	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2151909	0.88[EUR][1000 genomes]
rs2151912	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2151913	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2184369	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2184370	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2185352	0.85[EUR][1000 genomes]
rs2210683	0.86[EUR][1000 genomes]
rs2275045	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2275046	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2297928	0.87[EUR][1000 genomes]
rs2297930	0.87[EUR][1000 genomes]
rs2297932	0.87[EUR][1000 genomes]
rs2342764	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2342765	0.86[EUR][1000 genomes]
rs2342857	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2342858	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2342860	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2342861	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2880435	0.93[EUR][1000 genomes]
rs2880436	0.90[EUR][1000 genomes]
rs34157004	0.85[EUR][1000 genomes]
rs34337297	0.81[EUR][1000 genomes]
rs35031906	0.82[EUR][1000 genomes]
rs35443312	0.82[EUR][1000 genomes]
rs35763894	0.83[EUR][1000 genomes]
rs35830138	0.85[EUR][1000 genomes]
rs35961297	0.85[EUR][1000 genomes]
rs35967444	0.85[EUR][1000 genomes]
rs3763161	0.88[EUR][1000 genomes]
rs3763162	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3763163	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3798761	0.85[EUR][1000 genomes]
rs3805748	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3805749	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3805750	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3805751	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3805752	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805753	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3828700	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3924871	0.85[EUR][1000 genomes]
rs4242279	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4354168	0.85[EUR][1000 genomes]
rs4380763	0.85[EUR][1000 genomes]
rs4421206	0.85[EUR][1000 genomes]
rs4455682	0.85[EUR][1000 genomes]
rs4552	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4642491	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4816	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4869730	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869731	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869750	0.86[EUR][1000 genomes]
rs4869812	0.85[EUR][1000 genomes]
rs4869966	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870015	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4870019	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4870020	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4870048	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4870050	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870052	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870054	0.86[EUR][1000 genomes]
rs4870055	0.85[EUR][1000 genomes]
rs4870267	0.85[EUR][1000 genomes]
rs4870388	0.85[EUR][1000 genomes]
rs4870493	0.85[EUR][1000 genomes]
rs4870509	0.85[EUR][1000 genomes]
rs4870529	0.87[EUR][1000 genomes]
rs55763431	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55849538	0.83[EUR][1000 genomes]
rs55938765	0.89[EUR][1000 genomes]
rs55993747	0.81[EUR][1000 genomes]
rs56091542	0.83[EUR][1000 genomes]
rs56103941	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56374774	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56397000	0.88[EUR][1000 genomes]
rs57938011	0.83[EUR][1000 genomes]
rs60424881	0.88[EUR][1000 genomes]
rs62439811	0.83[EUR][1000 genomes]
rs62439836	0.84[EUR][1000 genomes]
rs62439837	0.85[EUR][1000 genomes]
rs62439840	0.85[EUR][1000 genomes]
rs62439842	0.85[EUR][1000 genomes]
rs62439843	0.82[EUR][1000 genomes]
rs62441279	0.87[EUR][1000 genomes]
rs62441284	0.89[EUR][1000 genomes]
rs62441303	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62441335	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6420132	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66516768	0.85[EUR][1000 genomes]
rs6899661	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6903998	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6913486	0.85[EUR][1000 genomes]
rs6914319	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6936395	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7450246	0.85[EUR][1000 genomes]
rs7738696	0.89[EUR][1000 genomes]
rs7740278	0.83[EUR][1000 genomes]
rs7740784	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743823	0.89[EUR][1000 genomes]
rs7744015	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7744105	0.89[EUR][1000 genomes]
rs7745915	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7752089	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752594	0.85[EUR][1000 genomes]
rs7753812	0.82[EUR][1000 genomes]
rs7754399	0.85[EUR][1000 genomes]
rs7764846	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7767622	0.85[EUR][1000 genomes]
rs7769115	0.89[EUR][1000 genomes]
rs7818	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs868375	0.87[EUR][1000 genomes]
rs880245	0.90[EUR][1000 genomes]
rs880246	0.90[EUR][1000 genomes]
rs9285522	0.83[EUR][1000 genomes]
rs9285523	0.80[EUR][1000 genomes]
rs9285524	0.82[EUR][1000 genomes]
rs9285525	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322196	0.81[EUR][1000 genomes]
rs9322198	0.81[EUR][1000 genomes]
rs9322200	0.82[EUR][1000 genomes]
rs9322204	0.83[EUR][1000 genomes]
rs9322207	0.85[EUR][1000 genomes]
rs9322208	0.85[EUR][1000 genomes]
rs9322209	0.85[EUR][1000 genomes]
rs9322210	0.85[EUR][1000 genomes]
rs9322214	0.85[EUR][1000 genomes]
rs9322215	0.84[EUR][1000 genomes]
rs9322218	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322219	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322220	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322221	0.94[EUR][1000 genomes]
rs9322223	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322224	0.95[EUR][1000 genomes]
rs933055	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9371199	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9371201	0.94[EUR][1000 genomes]
rs9371207	0.90[EUR][1000 genomes]
rs9371486	0.95[EUR][1000 genomes]
rs9372044	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9379348	0.81[EUR][1000 genomes]
rs9383546	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9383812	0.85[EUR][1000 genomes]
rs9383843	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383844	0.87[EUR][1000 genomes]
rs9383864	0.89[EUR][1000 genomes]
rs9383865	0.89[EUR][1000 genomes]
rs9383874	0.90[EUR][1000 genomes]
rs9393132	0.85[EUR][1000 genomes]
rs9393175	0.85[EUR][1000 genomes]
rs9397022	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9397036	0.89[EUR][1000 genomes]
rs9397357	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9406286	0.83[EUR][1000 genomes]
rs9406345	0.82[EUR][1000 genomes]
rs9406346	0.81[EUR][1000 genomes]
rs9478291	0.87[EUR][1000 genomes]
rs9478848	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9479094	0.86[EUR][1000 genomes]
rs9479494	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9479808	0.81[EUR][1000 genomes]
rs9479810	0.86[EUR][1000 genomes]
rs9480009	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9480031	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9485408	0.81[EUR][1000 genomes]
rs9505823	0.82[EUR][1000 genomes]
rs9505824	0.82[EUR][1000 genomes]
rs9505967	0.85[EUR][1000 genomes]
rs9505972	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9505974	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9505975	0.88[EUR][1000 genomes]
rs9505982	0.81[EUR][1000 genomes]
rs9505983	0.82[EUR][1000 genomes]
rs952165	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs952166	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs958953	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9688350	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9688412	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9688452	0.85[EUR][1000 genomes]
rs9688517	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9688699	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9688750	0.82[EUR][1000 genomes]
rs9688794	0.82[EUR][1000 genomes]
rs9688803	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9688809	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9688861	0.83[EUR][1000 genomes]
rs9688867	0.90[EUR][1000 genomes]
rs9688897	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9688902	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688938	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9688940	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9689025	0.95[EUR][1000 genomes]
rs9689036	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9689084	0.83[EUR][1000 genomes]
rs9689242	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9689269	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9689340	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9689447	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9689599	0.82[EUR][1000 genomes]
rs9689694	0.89[EUR][1000 genomes]
rs9689702	0.88[EUR][1000 genomes]
rs9689716	0.84[EUR][1000 genomes]
rs9689723	0.84[EUR][1000 genomes]
rs9765861	0.86[EUR][1000 genomes]
rs9765929	0.91[EUR][1000 genomes]
rs9765965	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9766004	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9766214	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9766444	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9766525	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9766562	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9766886	0.83[EUR][1000 genomes]
rs9767077	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9767105	0.84[EUR][1000 genomes]
rs9767113	0.87[EUR][1000 genomes]
rs9767122	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9767123	0.85[EUR][1000 genomes]
rs9767192	0.84[EUR][1000 genomes]
rs9767309	0.87[EUR][1000 genomes]
rs9767554	0.80[EUR][1000 genomes]
rs9767652	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9767727	0.85[EUR][1000 genomes]
rs9800580	0.82[EUR][1000 genomes]
rs9800603	0.82[EUR][1000 genomes]
rs9800614	0.84[EUR][1000 genomes]
rs9800686	0.80[EUR][1000 genomes]
rs9800736	0.85[EUR][1000 genomes]
rs9800806	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9800871	0.84[EUR][1000 genomes]
rs9968911	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv886763	chr6:150091219-150174507	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:18)

SNP	Gene	Cis/trans	Tissue	Source
rs4870049	NUP43	cis	Whole Blood	GTEx
rs4870049	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs4870049	RP11-350J20.5	cis	Artery Tibial	GTEx
rs4870049	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs4870049	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs4870049	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs4870049	RP11-350J20.5	cis	Thyroid	GTEx
rs4870049	PCMT1	cis	Esophagus Muscularis	GTEx
rs4870049	RP11-350J20.5	cis	lung	GTEx
rs4870049	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs4870049	RAET1G	cis	Thyroid	GTEx
rs4870049	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs4870049	RP11-350J20.5	cis	Nerve Tibial	GTEx
rs4870049	RAET1G	cis	Artery Tibial	GTEx
rs4870049	RP11-350J20.9	cis	Esophagus Mucosa	GTEx
rs4870049	RP11-350J20.5	cis	Artery Aorta	GTEx
rs4870049	KATNA1	cis	Muscle Skeletal	GTEx
rs4870049	GINM1	cis	Whole Blood	GTEx

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
2	chr6:150088000-150160400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:150094400-150167200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:150105800-150176400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:150112600-150167200	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:150119000-150164000	Weak transcription	Right Ventricle	heart
7	chr6:150120000-150164600	Weak transcription	Fetal Kidney	kidney
8	chr6:150132800-150161800	Weak transcription	Fetal Lung	lung
9	chr6:150133200-150161200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:150133200-150161800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:150133200-150162000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:150135000-150161600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:150141400-150167200	Weak transcription	Right Atrium	heart
14	chr6:150143600-150161600	Weak transcription	Left Ventricle	heart
15	chr6:150146200-150167000	Weak transcription	Psoas Muscle	Psoas
16	chr6:150147800-150163600	Weak transcription	Fetal Brain Female	brain
17	chr6:150150600-150166400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:150151200-150161600	Weak transcription	Stomach Mucosa	stomach
19	chr6:150151800-150159000	Strong transcription	Placenta	Placenta
20	chr6:150152400-150165400	Weak transcription	HSMMtube	muscle
21	chr6:150152600-150158200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:150152600-150159000	Strong transcription	Fetal Stomach	stomach
23	chr6:150152600-150161600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:150152800-150159000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:150152800-150161000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:150152800-150161200	Weak transcription	NHDF-Ad	bronchial
27	chr6:150152800-150161600	Weak transcription	Pancreas	Pancrea
28	chr6:150152800-150161800	Weak transcription	HSMM	muscle
29	chr6:150152800-150172600	Weak transcription	Aorta	Aorta
30	chr6:150153000-150163600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:150153000-150167000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:150153000-150167800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:150153200-150161600	Weak transcription	Brain Substantia Nigra	brain
34	chr6:150153600-150159400	Strong transcription	Fetal Intestine Small	intestine
35	chr6:150154400-150158600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:150154800-150158800	Strong transcription	Hela-S3	cervix
37	chr6:150154800-150159000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:150155000-150158600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:150155200-150158600	Strong transcription	Adipose Nuclei	Adipose
40	chr6:150155200-150158600	Strong transcription	Brain Anterior Caudate	brain
41	chr6:150155400-150159000	Strong transcription	HepG2	liver
42	chr6:150155600-150158400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr6:150155600-150161200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:150155800-150158400	Weak transcription	Brain Angular Gyrus	brain
45	chr6:150155800-150182600	Weak transcription	Dnd41	blood
46	chr6:150156000-150158800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:150156400-150158800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:150156400-150159200	Strong transcription	Esophagus	oesophagus
49	chr6:150156400-150161000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr6:150156400-150161200	Weak transcription	A549	lung

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