Variant report

Variant	rs3805750
Chromosome Location	chr6:150112201-150112202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:150112081-150112390	K562	blood:	n/a	n/a
2	POLR2A	chr6:150111984-150112372	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:150103186..150105713-chr6:150110065..150112313,2	MCF-7	breast:
2	chr6:150103039..150105538-chr6:150109602..150113560,4	K562	blood:
3	chr6:150069990..150071882-chr6:150109798..150112486,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000219433	TF binding region
ENSG00000120265	Chromatin interaction
ENSG00000120253	Chromatin interaction

Extended variants
information (count: 281 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:276)

rs_ID	r²[population]
rs10214845	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10452626	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10457850	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10457851	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10747276	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782314	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10782315	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10782316	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10782317	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10782318	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872643	0.82[EUR][1000 genomes]
rs10872644	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872645	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10872646	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872647	0.81[EUR][1000 genomes]
rs10872648	0.81[EUR][1000 genomes]
rs10872649	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10872650	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10872651	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10872652	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10872653	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10872656	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1108889	0.84[EUR][1000 genomes]
rs1112729	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1112730	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155671	0.81[EUR][1000 genomes]
rs11155674	0.82[EUR][1000 genomes]
rs11155675	0.80[EUR][1000 genomes]
rs11155677	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11155679	0.81[EUR][1000 genomes]
rs11155680	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11155681	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11155682	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11155683	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155685	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155689	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11968921	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12111376	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12174349	0.83[EUR][1000 genomes]
rs12174716	0.81[EUR][1000 genomes]
rs12175504	0.83[EUR][1000 genomes]
rs12175575	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12176034	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12178310	0.82[EUR][1000 genomes]
rs12179031	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12182220	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12183664	0.81[EUR][1000 genomes]
rs12195866	0.86[EUR][1000 genomes]
rs12200670	0.82[EUR][1000 genomes]
rs12203703	0.83[EUR][1000 genomes]
rs12205092	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12206402	0.80[EUR][1000 genomes]
rs12210605	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12211511	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12213779	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12525871	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12526675	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12528279	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12529698	0.81[EUR][1000 genomes]
rs12660304	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13215691	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1413654	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1413655	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17672976	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17673294	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1889473	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1934534	0.82[EUR][1000 genomes]
rs1984111	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2065663	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2065664	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2095375	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2151909	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2151912	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2151913	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2184369	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2184370	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2185352	0.82[EUR][1000 genomes]
rs2210683	0.86[EUR][1000 genomes]
rs2275045	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2275046	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2297928	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2297930	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2297932	0.83[EUR][1000 genomes]
rs2342764	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2342765	0.86[EUR][1000 genomes]
rs2342857	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2342858	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2342860	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2342861	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2880435	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2880436	0.84[EUR][1000 genomes]
rs34157004	0.82[EUR][1000 genomes]
rs34337297	0.82[EUR][1000 genomes]
rs35031906	0.85[EUR][1000 genomes]
rs35443312	0.85[EUR][1000 genomes]
rs35830138	0.82[EUR][1000 genomes]
rs35961297	0.82[EUR][1000 genomes]
rs35967444	0.82[EUR][1000 genomes]
rs3763161	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3763162	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3763163	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3798761	0.82[EUR][1000 genomes]
rs3805748	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3805749	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3805751	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805752	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805753	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3828700	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924871	0.82[EUR][1000 genomes]
rs4039600	0.81[EUR][1000 genomes]
rs4242279	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4354168	0.82[EUR][1000 genomes]
rs4380763	0.82[EUR][1000 genomes]
rs4421206	0.82[EUR][1000 genomes]
rs4455682	0.82[EUR][1000 genomes]
rs4552	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4642491	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4816	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869730	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4869731	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4869750	0.86[EUR][1000 genomes]
rs4869812	0.82[EUR][1000 genomes]
rs4869966	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870015	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870019	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870020	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870048	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4870049	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4870050	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4870052	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4870054	0.81[EUR][1000 genomes]
rs4870055	0.85[EUR][1000 genomes]
rs4870267	0.82[EUR][1000 genomes]
rs4870388	0.82[EUR][1000 genomes]
rs4870493	0.82[EUR][1000 genomes]
rs4870509	0.82[EUR][1000 genomes]
rs4870529	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55763431	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55938765	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56103941	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56374774	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56397000	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60424881	0.84[EUR][1000 genomes]
rs62439811	0.80[EUR][1000 genomes]
rs62439836	0.81[EUR][1000 genomes]
rs62439837	0.82[EUR][1000 genomes]
rs62439840	0.82[EUR][1000 genomes]
rs62439842	0.82[EUR][1000 genomes]
rs62439843	0.85[EUR][1000 genomes]
rs62441279	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62441284	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62441303	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62441335	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6420132	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66516768	0.82[EUR][1000 genomes]
rs6899661	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6903998	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6913486	0.82[EUR][1000 genomes]
rs6914319	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6936395	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7450246	0.82[EUR][1000 genomes]
rs7738696	0.85[EUR][1000 genomes]
rs7740278	0.80[EUR][1000 genomes]
rs7740784	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7743823	0.85[EUR][1000 genomes]
rs7744015	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7744105	0.85[EUR][1000 genomes]
rs7745915	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7752089	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7752594	0.82[EUR][1000 genomes]
rs7753812	0.86[EUR][1000 genomes]
rs7754399	0.82[EUR][1000 genomes]
rs7764846	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7767622	0.82[EUR][1000 genomes]
rs7769115	0.85[EUR][1000 genomes]
rs7818	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs868375	0.86[EUR][1000 genomes]
rs880245	0.84[EUR][1000 genomes]
rs880246	0.84[EUR][1000 genomes]
rs9285522	0.80[EUR][1000 genomes]
rs9285524	0.86[EUR][1000 genomes]
rs9285525	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322197	0.81[EUR][1000 genomes]
rs9322206	0.83[EUR][1000 genomes]
rs9322207	0.82[EUR][1000 genomes]
rs9322208	0.82[EUR][1000 genomes]
rs9322209	0.82[EUR][1000 genomes]
rs9322210	0.82[EUR][1000 genomes]
rs9322214	0.82[EUR][1000 genomes]
rs9322215	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9322218	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322219	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322220	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322221	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322223	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322224	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs933055	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9371199	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9371201	0.89[EUR][1000 genomes]
rs9371207	0.84[EUR][1000 genomes]
rs9371486	0.90[EUR][1000 genomes]
rs9372044	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383546	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383812	0.82[EUR][1000 genomes]
rs9383843	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9383844	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9383864	0.85[EUR][1000 genomes]
rs9383865	0.85[EUR][1000 genomes]
rs9383874	0.84[EUR][1000 genomes]
rs9393132	0.82[EUR][1000 genomes]
rs9393175	0.82[EUR][1000 genomes]
rs9397022	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9397036	0.85[EUR][1000 genomes]
rs9397357	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9478291	0.84[EUR][1000 genomes]
rs9478848	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9479094	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9479494	0.84[EUR][1000 genomes]
rs9479810	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9480009	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480031	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9505967	0.82[EUR][1000 genomes]
rs9505972	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9505974	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9505975	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9505983	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs952165	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs952166	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs958953	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9688350	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688412	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9688452	0.82[EUR][1000 genomes]
rs9688517	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688699	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9688750	0.85[EUR][1000 genomes]
rs9688803	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688809	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688858	0.82[EUR][1000 genomes]
rs9688867	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9688897	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688902	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9688938	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688940	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689025	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9689036	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9689084	0.80[EUR][1000 genomes]
rs9689242	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9689269	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689340	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9689447	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689694	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9689702	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9689716	0.81[EUR][1000 genomes]
rs9689723	0.81[EUR][1000 genomes]
rs9765861	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9765929	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9765965	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9766004	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9766214	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9766444	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9766525	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9766562	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767077	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767105	0.81[EUR][1000 genomes]
rs9767113	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9767122	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9767123	0.82[EUR][1000 genomes]
rs9767192	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9767309	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9767652	0.84[EUR][1000 genomes]
rs9767727	0.82[EUR][1000 genomes]
rs9800614	0.81[EUR][1000 genomes]
rs9800736	0.82[EUR][1000 genomes]
rs9800806	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9800871	0.81[EUR][1000 genomes]
rs9968911	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv886763	chr6:150091219-150174507	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv966666	chr6:150092480-150114661	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv1819303	chr6:150093678-150132092	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs3805750	NUP43	cis	Whole Blood	GTEx
rs3805750	RP11-350J20.5	cis	Artery Tibial	GTEx
rs3805750	RP11-350J20.5	cis	Thyroid	GTEx
rs3805750	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs3805750	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs3805750	RP11-350J20.5	cis	lung	GTEx
rs3805750	RP11-350J20.5	cis	Stomach	GTEx
rs3805750	GINM1	cis	Whole Blood	GTEx
rs3805750	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs3805750	RP11-350J20.5	cis	Nerve Tibial	GTEx
rs3805750	RP11-350J20.5	cis	Artery Aorta	GTEx
rs3805750	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs3805750	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs3805750	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150072000-150152000	Weak transcription	Aorta	Aorta
2	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
3	chr6:150077000-150115400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:150077200-150118400	Weak transcription	Pancreas	Pancrea
5	chr6:150077400-150142400	Weak transcription	Fetal Heart	heart
6	chr6:150077800-150118400	Weak transcription	Psoas Muscle	Psoas
7	chr6:150087200-150154000	Weak transcription	Small Intestine	intestine
8	chr6:150087400-150134000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:150087600-150117400	Weak transcription	Brain Substantia Nigra	brain
10	chr6:150087800-150112400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:150088000-150123400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:150088000-150160400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:150088200-150115600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:150093400-150133400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:150093600-150115000	Weak transcription	Hela-S3	cervix
16	chr6:150093600-150135200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:150093800-150115800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:150094400-150167200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:150097800-150115800	Weak transcription	Esophagus	oesophagus
20	chr6:150098000-150123400	Weak transcription	HSMMtube	muscle
21	chr6:150098000-150144000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr6:150098600-150118200	Weak transcription	Brain Angular Gyrus	brain
23	chr6:150100800-150115600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:150101400-150115800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:150101400-150123400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:150102000-150117000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:150104000-150117600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:150105200-150115400	Weak transcription	Ovary	ovary
29	chr6:150105200-150133600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:150105400-150114600	Weak transcription	HSMM	muscle
31	chr6:150105800-150114600	Weak transcription	Primary B cells from cord blood	blood
32	chr6:150105800-150114600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr6:150105800-150116800	Weak transcription	NHEK	skin
34	chr6:150105800-150176400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:150106000-150115200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:150106000-150117000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr6:150108200-150113200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:150110000-150125000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:150110000-150126800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:150110200-150127800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:150110600-150112800	Strong transcription	Primary T cells from cord blood	blood
42	chr6:150110600-150113200	Strong transcription	K562	blood
43	chr6:150110800-150113000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:150110800-150113000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr6:150110800-150120600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:150110800-150125200	Strong transcription	Dnd41	blood
47	chr6:150110800-150126400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr6:150110800-150129400	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr6:150111000-150112400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:150111000-150112400	Strong transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links