Variant report

Variant	rs4552
Chromosome Location	chr6:150132319-150132320
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150037962..150039498-chr6:150131610..150134476,2	K562	blood:
2	chr6:150127349..150128879-chr6:150131415..150134215,2	K562	blood:
3	chr6:150127289..150128879-chr6:150131415..150134275,2	K562	blood:

Variant related genes	Relation type
ENSG00000131023	Chromatin interaction

Extended variants
information (count: 297 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:293)

rs_ID	r²[population]
rs10214845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10452626	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10457850	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10457851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10747276	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10782310	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs10782312	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap]
rs10782314	0.84[EUR][1000 genomes]
rs10782315	0.83[EUR][1000 genomes]
rs10782316	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs10782317	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs10782318	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs10872643	0.82[EUR][1000 genomes]
rs10872644	0.84[EUR][1000 genomes]
rs10872645	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10872646	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs10872647	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10872648	0.81[EUR][1000 genomes]
rs10872649	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10872650	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10872651	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10872652	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10872653	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10872656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1108889	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs1112729	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1112730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11155670	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap]
rs11155671	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs11155674	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs11155675	0.80[EUR][1000 genomes]
rs11155677	0.84[EUR][1000 genomes]
rs11155679	0.81[EUR][1000 genomes]
rs11155680	0.80[EUR][1000 genomes]
rs11155681	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11155682	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11155683	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11155685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11155689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1125	0.92[CEU][hapmap]
rs11968921	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12111376	0.84[EUR][1000 genomes]
rs12174349	0.96[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs12174716	0.81[EUR][1000 genomes]
rs12175504	0.83[EUR][1000 genomes]
rs12175575	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12176034	0.88[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12178310	0.82[EUR][1000 genomes]
rs12179031	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12182220	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12183664	0.81[EUR][1000 genomes]
rs12195866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs12200670	0.82[EUR][1000 genomes]
rs12203703	0.83[EUR][1000 genomes]
rs12205092	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12206402	0.80[EUR][1000 genomes]
rs12210605	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12211511	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12213779	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12234128	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs12525871	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12526675	0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs12528279	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs12529698	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs12660304	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs13215691	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1413654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1413655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1572229	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap]
rs17672976	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17673294	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889473	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1934534	0.95[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs1984111	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2064521	0.95[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap]
rs2065663	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2065664	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2095375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2151909	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2151912	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2151913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184369	0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2184370	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2185352	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[EUR][1000 genomes]
rs2210683	0.88[EUR][1000 genomes]
rs2275045	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2275046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2297928	0.83[EUR][1000 genomes]
rs2297930	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs2297932	0.83[EUR][1000 genomes]
rs2342764	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2342765	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[EUR][1000 genomes]
rs2342857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2342858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2342860	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2342861	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2880435	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2880436	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs34157004	0.82[EUR][1000 genomes]
rs34337297	0.82[EUR][1000 genomes]
rs35031906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs35443312	0.85[EUR][1000 genomes]
rs35830138	0.82[EUR][1000 genomes]
rs35961297	0.82[EUR][1000 genomes]
rs35967444	0.82[EUR][1000 genomes]
rs3763161	0.85[EUR][1000 genomes]
rs3763162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798761	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs3805748	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3805749	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3805750	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805751	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805752	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3828700	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3924871	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs4242279	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4354168	0.91[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs4380763	0.82[EUR][1000 genomes]
rs4421206	0.85[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs4455682	0.86[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs4642491	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4869730	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869750	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[EUR][1000 genomes]
rs4869812	0.82[EUR][1000 genomes]
rs4869966	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4870015	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870019	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870020	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870048	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4870049	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4870050	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4870052	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4870054	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs4870055	0.87[EUR][1000 genomes]
rs4870267	0.82[EUR][1000 genomes]
rs4870388	0.82[EUR][1000 genomes]
rs4870493	0.82[EUR][1000 genomes]
rs4870509	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs4870529	0.83[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs55763431	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55938765	0.86[EUR][1000 genomes]
rs56103941	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56374774	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56397000	0.84[EUR][1000 genomes]
rs60424881	0.84[EUR][1000 genomes]
rs62439811	0.80[EUR][1000 genomes]
rs62439836	0.81[EUR][1000 genomes]
rs62439837	0.82[EUR][1000 genomes]
rs62439840	0.82[EUR][1000 genomes]
rs62439842	0.82[EUR][1000 genomes]
rs62439843	0.85[EUR][1000 genomes]
rs62441279	0.83[EUR][1000 genomes]
rs62441284	0.86[EUR][1000 genomes]
rs62441303	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62441335	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6420132	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66516768	0.82[EUR][1000 genomes]
rs6899661	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913486	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs6914319	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936395	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7450246	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs7738696	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs7740278	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes]
rs7740784	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7743823	0.87[EUR][1000 genomes]
rs7744015	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7744105	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs7745915	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7752089	0.91[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7752594	0.82[EUR][1000 genomes]
rs7753812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs7754399	0.82[EUR][1000 genomes]
rs7764846	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7767622	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs7769115	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs7818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868375	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[EUR][1000 genomes]
rs880245	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs880246	0.95[CEU][hapmap];0.84[CHB][hapmap];0.87[EUR][1000 genomes]
rs9285522	0.80[EUR][1000 genomes]
rs9285524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs9285525	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322197	0.81[EUR][1000 genomes]
rs9322198	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs9322200	0.95[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap]
rs9322206	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs9322207	0.82[EUR][1000 genomes]
rs9322208	0.82[EUR][1000 genomes]
rs9322209	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs9322210	0.82[EUR][1000 genomes]
rs9322214	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs9322215	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322218	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322219	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322220	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322221	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322223	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9322224	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs933055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371199	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9371201	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs9371207	0.87[EUR][1000 genomes]
rs9371486	0.92[EUR][1000 genomes]
rs9372044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9377230	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs9383546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383812	0.82[EUR][1000 genomes]
rs9383843	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9383844	0.83[EUR][1000 genomes]
rs9383864	0.87[EUR][1000 genomes]
rs9383865	0.87[EUR][1000 genomes]
rs9383874	0.87[EUR][1000 genomes]
rs9393132	0.82[EUR][1000 genomes]
rs9393175	0.95[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs9397022	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9397036	0.87[EUR][1000 genomes]
rs9397357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9404048	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs9478291	0.95[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs9478848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479094	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs9479494	0.84[EUR][1000 genomes]
rs9479808	0.96[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap]
rs9479810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9480009	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9480031	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9505967	0.82[EUR][1000 genomes]
rs9505972	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9505974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9505975	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9505983	0.86[EUR][1000 genomes]
rs952165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952166	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958953	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9688350	0.96[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs9688412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688452	0.95[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs9688517	0.84[EUR][1000 genomes]
rs9688699	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs9688750	0.85[EUR][1000 genomes]
rs9688803	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9688809	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9688858	0.82[EUR][1000 genomes]
rs9688867	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9688897	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9688902	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9688938	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9688940	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9689025	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9689036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9689084	0.86[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes]
rs9689242	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9689269	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9689340	0.84[EUR][1000 genomes]
rs9689447	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9689694	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9689702	0.81[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs9689716	0.81[EUR][1000 genomes]
rs9689723	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs9718079	0.91[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap]
rs9765861	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9765929	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9765965	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9766004	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs9766037	0.95[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs9766214	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9766444	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9766525	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9766562	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9766886	0.95[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap]
rs9767077	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9767105	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs9767113	0.83[EUR][1000 genomes]
rs9767122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9767123	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs9767192	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9767309	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs9767555	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs9767652	0.84[EUR][1000 genomes]
rs9767727	0.82[EUR][1000 genomes]
rs9800580	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap]
rs9800614	0.82[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs9800686	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap]
rs9800736	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs9800806	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs9800871	0.81[EUR][1000 genomes]
rs9968911	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv886763	chr6:150091219-150174507	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs4552	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs4552	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs4552	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs4552	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs4552	RP11-350J20.5	cis	Artery Aorta	GTEx
rs4552	RP11-350J20.5	cis	Stomach	GTEx
rs4552	RP11-350J20.5	cis	Thyroid	GTEx
rs4552	GINM1	cis	Whole Blood	GTEx
rs4552	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs4552	RP11-350J20.5	cis	lung	GTEx
rs4552	RP11-350J20.5	cis	Artery Tibial	GTEx
rs4552	NUP43	cis	Whole Blood	GTEx
rs4552	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs4552	RP11-350J20.9	cis	Skin Sun Exposed Lower leg	GTEx
rs4552	RP11-350J20.5	cis	Nerve Tibial	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150072000-150152000	Weak transcription	Aorta	Aorta
2	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
3	chr6:150077400-150142400	Weak transcription	Fetal Heart	heart
4	chr6:150087200-150154000	Weak transcription	Small Intestine	intestine
5	chr6:150087400-150134000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:150088000-150160400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:150093400-150133400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:150093600-150135200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:150094400-150167200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:150098000-150144000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:150105200-150133600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:150105800-150176400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:150112600-150167200	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:150116000-150151800	Weak transcription	NHLF	lung
15	chr6:150118000-150143800	Weak transcription	Hela-S3	cervix
16	chr6:150118800-150151400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:150119000-150140400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:150119000-150144600	Weak transcription	Psoas Muscle	Psoas
19	chr6:150119000-150145600	Weak transcription	Pancreas	Pancrea
20	chr6:150119000-150146600	Weak transcription	Esophagus	oesophagus
21	chr6:150119000-150152600	Weak transcription	A549	lung
22	chr6:150119000-150164000	Weak transcription	Right Ventricle	heart
23	chr6:150119200-150133600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:150119200-150136200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:150119200-150142600	Weak transcription	Gastric	stomach
26	chr6:150119400-150142800	Weak transcription	Brain Angular Gyrus	brain
27	chr6:150119400-150146600	Weak transcription	NHEK	skin
28	chr6:150120000-150164600	Weak transcription	Fetal Kidney	kidney
29	chr6:150120400-150144400	Weak transcription	Spleen	Spleen
30	chr6:150120600-150142800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:150121400-150144200	Weak transcription	Fetal Brain Female	brain
32	chr6:150122200-150135400	Weak transcription	GM12878-XiMat	blood
33	chr6:150122600-150144600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:150122800-150132600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:150123600-150157000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:150123800-150140800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr6:150123800-150155800	Weak transcription	NH-A	brain
38	chr6:150124000-150146600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:150124600-150134200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr6:150124600-150134400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:150124600-150135800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:150124600-150142200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr6:150124800-150136400	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr6:150124800-150139000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:150124800-150141800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:150124800-150142600	Weak transcription	HSMMtube	muscle
47	chr6:150124800-150144200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:150124800-150151600	Weak transcription	Colonic Mucosa	Colon
49	chr6:150125000-150134000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr6:150125000-150136800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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