Variant report

Variant	rs958953
Chromosome Location	chr6:150161871-150161872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:150161672-150162107	K562	blood:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
2	CTCF	chr6:150161724-150162056	Gliobla	brain:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
3	CTCF	chr6:150161820-150161970	GM12868	blood:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
4	CTCF	chr6:150161707-150162073	HepG2	liver:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
5	CTCF	chr6:150161800-150161950	HCFaa	heart:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
6	CTCF	chr6:150161820-150161970	GM12878	blood:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
7	NFIC	chr6:150161800-150162367	SK-N-SH	brain:	n/a	n/a
8	CTCF	chr6:150161780-150161930	GM12866	blood:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
9	CTCF	chr6:150161780-150161930	HL-60	blood:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
10	CTCF	chr6:150161694-150162078	GM12878	blood:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
11	CTCF	chr6:150161714-150162057	SK-N-SH_RA	brain:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
12	CTCF	chr6:150161800-150161950	HMEC	breast:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
13	CTCF	chr6:150161820-150161970	HUVEC	blood vessel:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
14	CTCF	chr6:150161820-150161970	HA-sp	spinal cord:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
15	CTCF	chr6:150161740-150161890	HCT-116	colon:	n/a	n/a
16	FOS	chr6:150161440-150162000	MCF10A-Er-Src	breast:	n/a	chr6:150161842-150161853
17	CTCF	chr6:150161764-150162040	MCF-7	breast:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
18	CTCF	chr6:150161764-150162029	ECC-1	luminal epithelium:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
19	CTCF	chr6:150161820-150161970	AG10803	skin:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
20	CTCF	chr6:150161766-150162036	MCF-7	breast:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
21	MAX	chr6:150161534-150162380	A549	lung:	n/a	n/a
22	NFIC	chr6:150161246-150162469	SK-N-SH	brain:	n/a	n/a
23	TCF12	chr6:150161242-150162537	SK-N-SH	brain:	n/a	chr6:150161622-150161629
24	CTCF	chr6:150161800-150161950	NB4	blood:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
25	CTCF	chr6:150161820-150161970	HepG2	liver:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
26	CTCF	chr6:150161800-150161950	HMF	breast:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
27	CTCF	chr6:150161820-150161970	GM12801	blood:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
28	KAP1	chr6:150161834-150162129	U2OS	brain:	n/a	n/a
29	RFX5	chr6:150161778-150162132	HepG2	liver:	n/a	n/a
30	CTCF	chr6:150161820-150161970	NHDF-neo	bronchial:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
31	RAD21	chr6:150161662-150162139	HepG2	liver:	n/a	chr6:150161888-150161907
32	SMC3	chr6:150161671-150162230	Hela-S3	cervix:	n/a	chr6:150161889-150161903 chr6:150161961-150161968
33	CTCF	chr6:150161780-150161930	GM12871	blood:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
34	RAD21	chr6:150161737-150162059	GM12878	blood:	n/a	chr6:150161888-150161907
35	RFX5	chr6:150161723-150162298	Hela-S3	cervix:	n/a	n/a
36	CTCF	chr6:150161728-150162035	A549	lung:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
37	GATA3	chr6:150161329-150162447	SK-N-SH	brain:	n/a	chr6:150161820-150161830 chr6:150161844-150161853
38	CTCFL	chr6:150161810-150161973	K562	blood:	n/a	chr6:150161894-150161903
39	RAD21	chr6:150161668-150162267	MCF-7	breast:	n/a	chr6:150161888-150161907
40	RXRA	chr6:150161863-150162386	SK-N-SH	brain:	n/a	chr6:150161895-150161902 chr6:150161887-150161907
41	CTCF	chr6:150161800-150161950	WERI-Rb-1	eye:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
42	ZNF143	chr6:150161746-150162109	H1-hESC	embryonic stem cell:	n/a	n/a
43	CTCF	chr6:150161760-150161910	GM12864	blood:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
44	CTCF	chr6:150161860-150162010	K562	blood:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
45	CTCF	chr6:150161776-150161959	A549	lung:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
46	CTCF	chr6:150161820-150161970	HEK293	kidney:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
47	CTCF	chr6:150161706-150162087	MCF-7	breast:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
48	EP300	chr6:150161854-150162274	SK-N-SH_RA	brain:	n/a	n/a
49	CTCF	chr6:150161840-150161990	GM12868	blood:	n/a	chr6:150161887-150161905 chr6:150161888-150161904
50	ARID3A	chr6:150161741-150161972	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:150160714..150164051-chr6:150166023..150170073,4	MCF-7	breast:
2	chr6:150161809..150162351-chr6:150185834..150186385,2	MCF-7	breast:
3	chr6:150159974..150162736-chr6:150163125..150166318,3	K562	blood:
4	chr6:150153688..150155920-chr6:150160413..150161947,2	MCF-7	breast:
5	chr6:150161677..150162212-chr6:150183171..150184090,2	MCF-7	breast:
6	chr6:150161413..150162333-chr6:150185782..150187004,5	MCF-7	breast:
7	chr6:150161791..150162424-chr6:150182291..150183108,3	MCF-7	breast:
8	chr6:150161516..150164235-chr6:150221796..150224745,2	K562	blood:
9	chr6:150160122..150165164-chr6:150183114..150187569,12	MCF-7	breast:
10	chr6:150159974..150162858-chr6:150163125..150167505,4	K562	blood:
11	chr6:150161826..150162373-chr6:150186077..150186733,2	K562	blood:
12	chr6:150161672..150163347-chr6:150225089..150227561,2	MCF-7	breast:
13	chr6:150161696..150162308-chr6:150247065..150247811,2	MCF-7	breast:
14	chr6:150161574..150163748-chr6:150174739..150177271,3	MCF-7	breast:

Variant related genes	Relation type
LRP11	TF binding region
ENSG00000216906	Chromatin interaction
ENSG00000268592	Chromatin interaction
ENSG00000120256	Chromatin interaction

Extended variants
information (count: 248 )
Associated
traits (count: 17 )

rSNPs within LD-proxies of this variant (count:243)

rs_ID	r²[population]
rs10214845	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10452626	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10457850	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10457851	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10747276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10782314	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10782315	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10782316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10782317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10782318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10872644	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10872646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10872647	1.00[CEU][hapmap]
rs10872649	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10872651	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10872652	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10872653	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10872656	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1108889	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs1112729	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1112730	0.95[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11155671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11155674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11155676	0.83[AMR][1000 genomes]
rs11155677	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11155680	0.85[AMR][1000 genomes]
rs11155681	0.81[AMR][1000 genomes]
rs11155682	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11155683	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155685	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155689	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1125	1.00[CEU][hapmap]
rs11968921	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12111376	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12174349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12175575	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12176034	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12179031	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12182220	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12195866	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs12203703	0.81[EUR][1000 genomes]
rs12205092	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12210605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12213779	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12525871	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12526675	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs12528279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12529698	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12660304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13215691	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1413654	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1413655	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1572229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17672976	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17673294	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1889473	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1934534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1984111	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2065663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2065664	0.95[CEU][hapmap];0.87[JPT][hapmap]
rs2095375	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2151909	0.82[EUR][1000 genomes]
rs2151912	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2151913	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2184369	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2184370	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2185352	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2210683	0.80[EUR][1000 genomes]
rs2275045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2275046	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2297928	0.81[EUR][1000 genomes]
rs2297930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2297932	0.81[EUR][1000 genomes]
rs2342764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2342765	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2342857	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2342858	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2342860	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2342861	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2880435	0.87[EUR][1000 genomes]
rs2880436	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[EUR][1000 genomes]
rs34157004	0.80[EUR][1000 genomes]
rs35031906	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs35830138	0.80[EUR][1000 genomes]
rs35961297	0.80[EUR][1000 genomes]
rs35967444	0.80[EUR][1000 genomes]
rs3763161	0.82[EUR][1000 genomes]
rs3763162	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3763163	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3798761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs3805748	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3805749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3805750	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3805751	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3805752	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3805753	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3828700	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3924871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4242279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4354168	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4380763	0.80[EUR][1000 genomes]
rs4421206	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs4455682	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4552	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4642491	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4816	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4869730	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4869731	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4869750	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs4869812	0.80[EUR][1000 genomes]
rs4869966	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4870015	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4870019	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4870020	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4870048	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4870049	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870054	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs4870267	0.80[EUR][1000 genomes]
rs4870509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4870529	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs55763431	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55938765	0.83[EUR][1000 genomes]
rs56103941	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56374774	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56397000	0.82[EUR][1000 genomes]
rs60424881	0.82[EUR][1000 genomes]
rs62439837	0.80[EUR][1000 genomes]
rs62439840	0.80[EUR][1000 genomes]
rs62439842	0.80[EUR][1000 genomes]
rs62441279	0.81[EUR][1000 genomes]
rs62441284	0.83[EUR][1000 genomes]
rs62441303	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62441335	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6420132	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66516768	0.80[EUR][1000 genomes]
rs6899661	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6903998	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6913486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6914319	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6936395	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7450246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7738696	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[EUR][1000 genomes]
rs7740784	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7743823	0.83[EUR][1000 genomes]
rs7744015	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7744105	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs7745915	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7752089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7753812	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7764846	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7767622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7769115	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs7818	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs868375	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs880245	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs880246	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[EUR][1000 genomes]
rs9285524	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs9285525	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322206	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs9322209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9322214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9322218	0.95[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322219	0.91[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322220	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322221	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9322223	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9322224	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs933055	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9371199	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9371201	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9371207	0.84[EUR][1000 genomes]
rs9371486	0.89[EUR][1000 genomes]
rs9372044	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9383546	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9383843	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9383844	0.81[EUR][1000 genomes]
rs9383864	0.83[EUR][1000 genomes]
rs9383865	0.83[EUR][1000 genomes]
rs9383874	0.84[EUR][1000 genomes]
rs9393175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs9397022	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9397036	0.83[EUR][1000 genomes]
rs9397357	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9478291	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9478848	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9479094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9479494	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9479808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9479810	0.95[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap]
rs9480009	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9480031	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9505972	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9505974	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9505975	0.82[EUR][1000 genomes]
rs952165	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs952166	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9688350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9688412	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9688452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9688517	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9688699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs9688803	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9688809	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9688867	0.84[EUR][1000 genomes]
rs9688897	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9688902	0.91[EUR][1000 genomes]
rs9688938	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9688940	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9689025	0.89[EUR][1000 genomes]
rs9689036	0.95[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9689242	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9689269	0.90[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9689340	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9689447	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9689694	0.83[EUR][1000 genomes]
rs9689702	0.93[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9689723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9718079	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9765861	0.81[EUR][1000 genomes]
rs9765929	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9765965	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9766004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9766214	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9766444	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9766525	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9766562	0.91[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9767077	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9767105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9767113	0.81[EUR][1000 genomes]
rs9767122	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9767123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9767309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9767555	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9767652	0.82[EUR][1000 genomes]
rs9767727	0.81[EUR][1000 genomes]
rs9800614	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9800736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9800806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9968911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv886763	chr6:150091219-150174507	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:17)

SNP	Gene	Cis/trans	Tissue	Source
rs958953	RP11-350J20.5	cis	Esophagus Muscularis	GTEx
rs958953	RP11-350J20.9	cis	Esophagus Mucosa	GTEx
rs958953	GINM1	cis	Whole Blood	GTEx
rs958953	RP11-350J20.5	cis	Artery Tibial	GTEx
rs958953	RP11-350J20.5	cis	Thyroid	GTEx
rs958953	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs958953	C6orf72	Cis_1M	lymphoblastoid	RTeQTL
rs958953	NUP43	Cis_1M	lymphoblastoid	RTeQTL
rs958953	RP11-350J20.5	cis	Esophagus Mucosa	GTEx
rs958953	RAET1G	cis	Artery Tibial	GTEx
rs958953	RP11-350J20.5	cis	lung	GTEx
rs958953	RP11-350J20.5	cis	Adipose Subcutaneous	GTEx
rs958953	RP11-350J20.5	cis	Artery Aorta	GTEx
rs958953	RP11-350J20.5	cis	Nerve Tibial	GTEx
rs958953	NUP43	cis	Whole Blood	GTEx
rs958953	PCMT1	cis	Esophagus Muscularis	GTEx
rs958953	RAET1G	cis	Thyroid	GTEx

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
2	chr6:150094400-150167200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:150105800-150176400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:150112600-150167200	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:150119000-150164000	Weak transcription	Right Ventricle	heart
6	chr6:150120000-150164600	Weak transcription	Fetal Kidney	kidney
7	chr6:150133200-150162000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:150141400-150167200	Weak transcription	Right Atrium	heart
9	chr6:150146200-150167000	Weak transcription	Psoas Muscle	Psoas
10	chr6:150147800-150163600	Weak transcription	Fetal Brain Female	brain
11	chr6:150150600-150166400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:150152400-150165400	Weak transcription	HSMMtube	muscle
13	chr6:150152800-150172600	Weak transcription	Aorta	Aorta
14	chr6:150153000-150163600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:150153000-150167000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:150153000-150167800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:150155800-150182600	Weak transcription	Dnd41	blood
18	chr6:150156400-150168400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:150157600-150167000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:150158600-150163800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:150158600-150165400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:150158600-150167200	Weak transcription	Adipose Nuclei	Adipose
23	chr6:150158800-150163400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:150158800-150176400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:150159000-150162000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:150159000-150163600	Weak transcription	Brain Germinal Matrix	brain
27	chr6:150159000-150165400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:150159200-150163400	Weak transcription	Esophagus	oesophagus
29	chr6:150159200-150172800	Weak transcription	Spleen	Spleen
30	chr6:150160600-150163600	Weak transcription	Ovary	ovary
31	chr6:150160800-150163400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:150161000-150162200	Enhancers	Duodenum Mucosa	Duodenum
33	chr6:150161000-150162400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:150161000-150162600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr6:150161000-150162600	Enhancers	NH-A	brain
36	chr6:150161000-150162600	Enhancers	NHLF	lung
37	chr6:150161200-150162000	Enhancers	Fetal Intestine Small	intestine
38	chr6:150161200-150162000	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr6:150161200-150162200	Enhancers	HMEC	breast
40	chr6:150161200-150162400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:150161200-150162600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:150161200-150162600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:150161200-150162600	Genic enhancers	Brain Inferior Temporal Lobe	brain
44	chr6:150161200-150162600	Enhancers	Fetal Intestine Large	intestine
45	chr6:150161200-150162600	Enhancers	Small Intestine	intestine
46	chr6:150161200-150162600	Enhancers	NHDF-Ad	bronchial
47	chr6:150161200-150162600	Enhancers	NHEK	skin
48	chr6:150161200-150162600	Enhancers	Osteobl	bone
49	chr6:150161200-150164000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:150161200-150164600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Variant report

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