Variant report

Variant	rs4897139
Chromosome Location	chr6:149850599-149850600
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149849947..149853709-chr6:149858888..149862438,4	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10485097	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1125107	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12524946	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12663698	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12665533	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1474640	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17732745	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2105200	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2341550	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2341551	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2341768	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28580659	0.83[EUR][1000 genomes]
rs2880075	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3813675	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4869797	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4897128	0.90[EUR][1000 genomes]
rs4897131	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4897132	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4897133	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4897137	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4897138	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60404985	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62439778	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62442787	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62442788	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62442789	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62442790	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62442792	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62442793	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62442795	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62442798	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6570968	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6911016	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6929614	0.80[ASN][1000 genomes]
rs761617	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7753560	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7774559	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7774597	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs909792	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322184	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322185	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9373594	0.94[EUR][1000 genomes]
rs9373595	0.87[EUR][1000 genomes]
rs9373596	0.85[EUR][1000 genomes]
rs9377220	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9377221	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9377223	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9377224	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9390684	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9390687	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9390688	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9390689	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9399689	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9399690	0.83[EUR][1000 genomes]
rs9404042	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9404043	0.87[EUR][1000 genomes]
rs9404044	0.87[EUR][1000 genomes]
rs9406344	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9498368	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9689569	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9800648	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4897139	RP11-350J20.5	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149810800-149851600	Weak transcription	Esophagus	oesophagus
2	chr6:149811200-149860600	Weak transcription	Aorta	Aorta
3	chr6:149820600-149851400	Weak transcription	NHLF	lung
4	chr6:149820600-149865200	Weak transcription	Stomach Mucosa	stomach
5	chr6:149823800-149851800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:149824400-149862200	Strong transcription	Liver	Liver
7	chr6:149824600-149864200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:149825000-149851800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:149829600-149851600	Weak transcription	Colonic Mucosa	Colon
10	chr6:149830600-149865600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:149831400-149851800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:149832000-149865800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:149832200-149862200	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr6:149835000-149862000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:149835000-149862200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:149835000-149862200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:149835000-149862200	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr6:149835000-149863600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:149835200-149862400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr6:149836000-149862200	Strong transcription	Fetal Thymus	thymus
21	chr6:149836200-149862400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr6:149836400-149852200	Strong transcription	HSMM	muscle
23	chr6:149836400-149862800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:149837200-149862200	Strong transcription	Placenta	Placenta
25	chr6:149837200-149862200	Strong transcription	Osteobl	bone
26	chr6:149837400-149866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:149837600-149862200	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:149838600-149862400	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:149838800-149862200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:149838800-149863000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:149839000-149863800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:149839200-149852200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:149839200-149862200	Strong transcription	Fetal Intestine Large	intestine
34	chr6:149839200-149862400	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr6:149839400-149856200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:149839400-149858000	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr6:149839400-149862200	Strong transcription	Adipose Nuclei	Adipose
38	chr6:149839800-149862000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:149839800-149862400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:149839800-149862400	Strong transcription	Dnd41	blood
41	chr6:149839800-149862800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:149840000-149862200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:149840200-149862000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:149840200-149862200	Strong transcription	Duodenum Mucosa	Duodenum
45	chr6:149840200-149862400	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:149840400-149859200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr6:149840400-149861800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr6:149840400-149862200	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:149840400-149862800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:149840600-149862400	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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