Variant report

Variant	rs34897283
Chromosome Location	chr6:33461936-33461937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1755038	0.83[EUR][1000 genomes]
rs3843520	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3843521	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3857558	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4713629	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713630	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4713631	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4713633	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6457728	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6910219	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910721	0.83[EUR][1000 genomes]
rs6913018	0.88[EUR][1000 genomes]
rs7383692	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7762843	0.81[AMR][1000 genomes]
rs9368764	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9368765	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9368766	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33453000-33474000	Weak transcription	Right Atrium	heart
2	chr6:33458800-33462600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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