Variant report

Variant	rs9368764
Chromosome Location	chr6:33476254-33476255
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1755038	0.83[EUR][1000 genomes]
rs34897283	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3843520	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3843521	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3857558	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4713629	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4713630	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4713631	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4713633	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6457728	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6910219	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6910721	0.83[EUR][1000 genomes]
rs6913018	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7383692	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7762843	0.83[AMR][1000 genomes]
rs9368765	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9368766	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv521506	chr6:33468151-33480738	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv524010	chr6:33468151-33505981	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33473800-33476800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:33474200-33476800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:33474200-33476800	Weak transcription	Adipose Nuclei	Adipose
4	chr6:33474200-33477000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:33474400-33476800	Weak transcription	Right Atrium	heart
6	chr6:33474400-33476800	Weak transcription	K562	blood
7	chr6:33474400-33477000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:33474400-33481200	Weak transcription	Fetal Intestine Small	intestine
9	chr6:33474600-33477000	Weak transcription	Fetal Heart	heart
10	chr6:33475200-33476600	Enhancers	GM12878-XiMat	blood
11	chr6:33476000-33477200	Enhancers	Primary B cells from peripheral blood	blood
12	chr6:33476200-33476400	Enhancers	Spleen	Spleen
13	chr6:33476200-33476600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:33476200-33476600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr6:33476200-33476800	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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