Variant report

Variant	rs9368766
Chromosome Location	chr6:33478538-33478539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11963294	1.00[CHB][hapmap]
rs12529825	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1536042	1.00[JPT][hapmap]
rs16869178	1.00[JPT][hapmap]
rs1755038	0.86[EUR][1000 genomes]
rs2395451	1.00[JPT][hapmap]
rs34897283	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3843520	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3843521	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857558	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs449978	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs4711333	1.00[JPT][hapmap]
rs4713629	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4713630	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713631	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713633	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713647	1.00[JPT][hapmap]
rs480568	1.00[JPT][hapmap]
rs485623	1.00[JPT][hapmap]
rs557559	1.00[JPT][hapmap]
rs560218	1.00[JPT][hapmap]
rs561276	1.00[JPT][hapmap]
rs6457728	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910219	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6910721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs6913018	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7383692	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752930	1.00[JPT][hapmap]
rs7757722	1.00[JPT][hapmap]
rs7762843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9368764	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9368765	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv521506	chr6:33468151-33480738	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv524010	chr6:33468151-33505981	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33474400-33481200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:33476600-33479800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:33477200-33480400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:33477400-33479400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:33477400-33479800	Weak transcription	Placenta	Placenta
6	chr6:33477400-33480000	Weak transcription	Primary B cells from cord blood	blood
7	chr6:33477400-33480200	Weak transcription	Right Atrium	heart
8	chr6:33477600-33479400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:33477600-33479400	Weak transcription	K562	blood
10	chr6:33477600-33479800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:33477600-33479800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:33477600-33479800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:33477600-33480000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:33477600-33480000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:33477600-33480000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:33477600-33480000	Weak transcription	Spleen	Spleen
17	chr6:33477600-33480200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:33477600-33480200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:33477800-33479200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr6:33477800-33480600	Weak transcription	GM12878-XiMat	blood
21	chr6:33478400-33479000	Enhancers	HepG2	liver

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