Variant report

Variant	rs34975545
Chromosome Location	chr3:100911133-100911134
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34334124	1.00[AFR][1000 genomes]
rs34673745	0.93[AMR][1000 genomes]
rs73141627	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2754039	chr3:100882310-100981310	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100901800-100911800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:100903000-100912800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:100904600-100914600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:100907400-100912400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:100908400-100911600	Enhancers	NHDF-Ad	bronchial
6	chr3:100908600-100911600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:100909200-100911800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:100909600-100912600	Weak transcription	NHLF	lung
9	chr3:100909800-100912000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:100910000-100911600	Weak transcription	A549	lung
11	chr3:100910800-100913400	Enhancers	Osteobl	bone
12	chr3:100911000-100912800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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