Variant report

Variant	rs73141627
Chromosome Location	chr3:101087587-101087588
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101080814..101082809-chr3:101085359..101088261,2	K562	blood:
2	chr3:101070727..101072783-chr3:101085749..101088614,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10511190	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13099785	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34128890	1.00[AFR][1000 genomes]
rs34334124	1.00[AFR][1000 genomes]
rs34673745	0.81[AMR][1000 genomes]
rs34975545	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs62280738	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1003475	chr3:101005238-101120030	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101030800-101096400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:101038600-101101800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:101038800-101089800	Weak transcription	Pancreas	Pancrea
4	chr3:101039800-101106600	Weak transcription	Thymus	Thymus
5	chr3:101040800-101090000	Weak transcription	Brain Angular Gyrus	brain
6	chr3:101042800-101089600	Weak transcription	NH-A	brain
7	chr3:101043200-101105000	Weak transcription	Brain Anterior Caudate	brain
8	chr3:101043800-101096600	Weak transcription	Brain Substantia Nigra	brain
9	chr3:101044400-101103000	Weak transcription	Gastric	stomach
10	chr3:101045800-101110800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:101046400-101089000	Weak transcription	Fetal Brain Male	brain
12	chr3:101047400-101096000	Weak transcription	Psoas Muscle	Psoas
13	chr3:101048600-101088000	Weak transcription	HUVEC	blood vessel
14	chr3:101049200-101096000	Weak transcription	Ovary	ovary
15	chr3:101049200-101102200	Weak transcription	Right Ventricle	heart
16	chr3:101066000-101089800	Weak transcription	Brain Germinal Matrix	brain
17	chr3:101066000-101094000	Weak transcription	Fetal Intestine Large	intestine
18	chr3:101066200-101089000	Weak transcription	Fetal Lung	lung
19	chr3:101066200-101095400	Weak transcription	Fetal Kidney	kidney
20	chr3:101066200-101096000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:101069000-101089800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr3:101073200-101091000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:101074600-101092200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:101076000-101088000	Weak transcription	NHLF	lung
25	chr3:101076200-101102000	Weak transcription	Lung	lung
26	chr3:101076200-101105600	Weak transcription	Esophagus	oesophagus
27	chr3:101076600-101091400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr3:101076600-101096400	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:101076800-101092800	Weak transcription	Fetal Muscle Leg	muscle
30	chr3:101076800-101093400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr3:101077000-101095800	Weak transcription	Colon Smooth Muscle	Colon
32	chr3:101077000-101096000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:101077000-101102200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr3:101077200-101089000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:101077800-101094400	Weak transcription	Fetal Intestine Small	intestine
36	chr3:101077800-101096000	Weak transcription	Small Intestine	intestine
37	chr3:101077800-101101000	Weak transcription	NHDF-Ad	bronchial
38	chr3:101077800-101102000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:101078200-101093200	Weak transcription	GM12878-XiMat	blood
40	chr3:101079000-101090800	Strong transcription	Primary B cells from cord blood	blood
41	chr3:101079200-101096000	Weak transcription	HSMMtube	muscle
42	chr3:101079600-101094400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:101080400-101098800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr3:101081200-101091000	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr3:101081200-101091000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr3:101081200-101094600	Weak transcription	Stomach Mucosa	stomach
47	chr3:101083200-101089800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr3:101083200-101102000	Weak transcription	Left Ventricle	heart
49	chr3:101083400-101089800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr3:101083400-101101800	Weak transcription	Stomach Smooth Muscle	stomach

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