Variant report

Variant	rs62280738
Chromosome Location	chr3:101203699-101203700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10511190	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13099785	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34128890	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34334124	1.00[AFR][1000 genomes]
rs60569501	0.93[AMR][1000 genomes]
rs73141627	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803745	chr3:101196030-101230330	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101160200-101210800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:101161400-101207600	Weak transcription	Aorta	Aorta
3	chr3:101171200-101230400	Weak transcription	Brain Substantia Nigra	brain
4	chr3:101171400-101207800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:101174600-101211000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:101176000-101211200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:101176600-101211600	Weak transcription	HSMM	muscle
8	chr3:101176800-101211200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:101176800-101211400	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:101177600-101210800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:101178200-101207000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr3:101186000-101211000	Weak transcription	Brain Anterior Caudate	brain
13	chr3:101186000-101211000	Weak transcription	Pancreas	Pancrea
14	chr3:101186000-101211000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:101186200-101211200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:101186400-101210600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:101186400-101223600	Weak transcription	Gastric	stomach
18	chr3:101187000-101211200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:101188200-101206800	Weak transcription	Adipose Nuclei	Adipose
20	chr3:101189000-101207000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:101190800-101207200	Weak transcription	Fetal Intestine Large	intestine
22	chr3:101191000-101206800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:101193200-101230400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr3:101193600-101211400	Weak transcription	Fetal Brain Male	brain
25	chr3:101194400-101204200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr3:101194400-101209600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:101194600-101206200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr3:101195000-101213200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr3:101196200-101210800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:101196800-101211400	Weak transcription	Placenta	Placenta
31	chr3:101197400-101204000	Weak transcription	Thymus	Thymus
32	chr3:101197600-101210800	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:101198000-101203800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr3:101198400-101220600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr3:101198600-101231000	Weak transcription	GM12878-XiMat	blood
36	chr3:101199800-101211000	Weak transcription	Liver	Liver
37	chr3:101200000-101205000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr3:101200000-101205200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr3:101200200-101204600	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr3:101200200-101205200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:101200400-101211000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr3:101200400-101216200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr3:101201800-101204400	ZNF genes & repeats	Fetal Brain Female	brain
44	chr3:101201800-101204400	Strong transcription	Fetal Thymus	thymus
45	chr3:101201800-101211000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:101201800-101220000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr3:101202000-101204200	Strong transcription	Primary T cells from cord blood	blood
48	chr3:101202000-101204400	Strong transcription	Dnd41	blood
49	chr3:101202000-101210600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr3:101202200-101204200	Strong transcription	Primary T cells fromperipheralblood	blood

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