Variant report

Variant	rs10511190
Chromosome Location	chr3:101226952-101226953
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101225556..101229482-chr3:101230162..101232900,3	MCF-7	breast:
2	chr3:101208401..101210494-chr3:101226740..101229607,2	MCF-7	breast:
3	chr3:101217352..101220548-chr3:101224005..101228442,4	K562	blood:
4	chr3:101225102..101229003-chr3:101290348..101293915,4	K562	blood:

Variant related genes	Relation type
ENSG00000138468	Chromatin interaction
ENSG00000081154	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13099785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34128890	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34334124	1.00[AFR][1000 genomes]
rs60569501	0.87[AMR][1000 genomes]
rs62280738	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73141627	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803745	chr3:101196030-101230330	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101171200-101230400	Weak transcription	Brain Substantia Nigra	brain
2	chr3:101193200-101230400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:101198600-101231000	Weak transcription	GM12878-XiMat	blood
4	chr3:101202200-101230800	Weak transcription	Psoas Muscle	Psoas
5	chr3:101204000-101231200	Weak transcription	Esophagus	oesophagus
6	chr3:101204200-101227600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:101204200-101228400	Weak transcription	NHDF-Ad	bronchial
8	chr3:101204400-101230800	Weak transcription	Right Ventricle	heart
9	chr3:101204600-101230800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:101207800-101231000	Weak transcription	Aorta	Aorta
11	chr3:101209600-101227800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:101210000-101231200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:101211200-101231000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:101211600-101230400	Weak transcription	Placenta	Placenta
15	chr3:101211800-101227400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:101211800-101228200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:101211800-101229600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:101211800-101230400	Weak transcription	Liver	Liver
19	chr3:101211800-101230800	Weak transcription	Lung	lung
20	chr3:101211800-101231400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:101212000-101229400	Weak transcription	Fetal Brain Male	brain
22	chr3:101212000-101230000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:101212000-101230200	Weak transcription	Adipose Nuclei	Adipose
24	chr3:101212200-101228200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:101212200-101229800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr3:101212200-101230000	Weak transcription	Colon Smooth Muscle	Colon
27	chr3:101212200-101230000	Weak transcription	Fetal Brain Female	brain
28	chr3:101212200-101230200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:101212200-101230200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr3:101212200-101230600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr3:101212200-101230800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:101212200-101230800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr3:101212200-101230800	Weak transcription	Brain Hippocampus Middle	brain
34	chr3:101212200-101230800	Weak transcription	Fetal Kidney	kidney
35	chr3:101212200-101230800	Weak transcription	Left Ventricle	heart
36	chr3:101212200-101230800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr3:101212200-101230800	Weak transcription	HSMM	muscle
38	chr3:101212200-101231000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr3:101212200-101231000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr3:101212200-101231000	Weak transcription	Spleen	Spleen
41	chr3:101212800-101229800	Weak transcription	Brain Germinal Matrix	brain
42	chr3:101216600-101231000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr3:101217000-101230000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:101217600-101229400	Weak transcription	Fetal Thymus	thymus
45	chr3:101217800-101230000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr3:101217800-101230200	Weak transcription	Fetal Muscle Leg	muscle
47	chr3:101217800-101230800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr3:101217800-101231000	Weak transcription	Ovary	ovary
49	chr3:101218000-101228400	Weak transcription	Dnd41	blood
50	chr3:101218000-101230800	Weak transcription	Monocytes-CD14+_RO01746	blood

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