Variant report

Variant	rs34334124
Chromosome Location	chr3:101091192-101091193
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101090373..101093270-chr3:101096278..101099184,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10511190	1.00[AFR][1000 genomes]
rs13099785	1.00[AFR][1000 genomes]
rs34128890	1.00[AFR][1000 genomes]
rs34975545	1.00[AFR][1000 genomes]
rs62280738	1.00[AFR][1000 genomes]
rs73141627	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1003475	chr3:101005238-101120030	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101030800-101096400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:101038600-101101800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:101039800-101106600	Weak transcription	Thymus	Thymus
4	chr3:101043200-101105000	Weak transcription	Brain Anterior Caudate	brain
5	chr3:101043800-101096600	Weak transcription	Brain Substantia Nigra	brain
6	chr3:101044400-101103000	Weak transcription	Gastric	stomach
7	chr3:101045800-101110800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:101047400-101096000	Weak transcription	Psoas Muscle	Psoas
9	chr3:101049200-101096000	Weak transcription	Ovary	ovary
10	chr3:101049200-101102200	Weak transcription	Right Ventricle	heart
11	chr3:101066000-101094000	Weak transcription	Fetal Intestine Large	intestine
12	chr3:101066200-101095400	Weak transcription	Fetal Kidney	kidney
13	chr3:101066200-101096000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:101074600-101092200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:101076200-101102000	Weak transcription	Lung	lung
16	chr3:101076200-101105600	Weak transcription	Esophagus	oesophagus
17	chr3:101076600-101091400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:101076600-101096400	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:101076800-101092800	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:101076800-101093400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr3:101077000-101095800	Weak transcription	Colon Smooth Muscle	Colon
22	chr3:101077000-101096000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:101077000-101102200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:101077800-101094400	Weak transcription	Fetal Intestine Small	intestine
25	chr3:101077800-101096000	Weak transcription	Small Intestine	intestine
26	chr3:101077800-101101000	Weak transcription	NHDF-Ad	bronchial
27	chr3:101077800-101102000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:101078200-101093200	Weak transcription	GM12878-XiMat	blood
29	chr3:101079200-101096000	Weak transcription	HSMMtube	muscle
30	chr3:101079600-101094400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr3:101080400-101098800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr3:101081200-101094600	Weak transcription	Stomach Mucosa	stomach
33	chr3:101083200-101102000	Weak transcription	Left Ventricle	heart
34	chr3:101083400-101101800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:101083400-101105200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:101083600-101094400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr3:101083600-101096400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr3:101083600-101098200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr3:101083800-101096000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr3:101084000-101094400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr3:101084400-101102000	Weak transcription	Fetal Stomach	stomach
42	chr3:101084600-101106600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:101084800-101102000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:101085000-101106600	Weak transcription	Fetal Brain Female	brain
45	chr3:101085400-101096200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:101085400-101098200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr3:101085600-101091800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:101085600-101094600	Weak transcription	Liver	Liver
49	chr3:101085600-101095200	Weak transcription	Fetal Heart	heart
50	chr3:101085600-101096000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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