Variant report

Variant	rs34128890
Chromosome Location	chr3:101162061-101162062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10511190	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13099785	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34334124	1.00[AFR][1000 genomes]
rs60569501	0.81[AMR][1000 genomes]
rs62280738	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73141627	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv513063	chr3:101161321-101163914	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101141000-101185600	Weak transcription	Right Ventricle	heart
2	chr3:101146000-101185600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:101154600-101163800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr3:101157400-101167400	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:101158600-101163000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:101158600-101175200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:101160200-101176200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:101160200-101185600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:101160200-101210800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:101160400-101176000	Weak transcription	Left Ventricle	heart
11	chr3:101160600-101162600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:101160600-101163800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr3:101160600-101163800	Weak transcription	Liver	Liver
14	chr3:101160600-101164200	Weak transcription	Adipose Nuclei	Adipose
15	chr3:101160600-101176000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:101160600-101183200	Weak transcription	Psoas Muscle	Psoas
17	chr3:101160600-101184000	Weak transcription	Spleen	Spleen
18	chr3:101160600-101185600	Weak transcription	Gastric	stomach
19	chr3:101160800-101163800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:101160800-101163800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr3:101160800-101166000	Weak transcription	Fetal Lung	lung
22	chr3:101161000-101163200	Weak transcription	Primary T cells from cord blood	blood
23	chr3:101161000-101163800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:101161200-101163800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:101161200-101164400	Weak transcription	K562	blood
26	chr3:101161400-101163600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:101161400-101163800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr3:101161400-101163800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:101161400-101163800	Weak transcription	Dnd41	blood
30	chr3:101161400-101164000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:101161400-101164000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:101161400-101164800	Weak transcription	Primary B cells from cord blood	blood
33	chr3:101161400-101164800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:101161400-101166800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr3:101161400-101168200	Weak transcription	Pancreas	Pancrea
36	chr3:101161400-101172800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:101161400-101172800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:101161400-101175600	Weak transcription	Fetal Stomach	stomach
39	chr3:101161400-101175600	Weak transcription	Fetal Thymus	thymus
40	chr3:101161400-101176400	Weak transcription	Ovary	ovary
41	chr3:101161400-101176600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr3:101161400-101183800	Weak transcription	Lung	lung
43	chr3:101161400-101185600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:101161400-101196800	Weak transcription	Thymus	Thymus
45	chr3:101161400-101207600	Weak transcription	Aorta	Aorta
46	chr3:101161600-101163600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr3:101161600-101163800	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr3:101161800-101163800	Weak transcription	Fetal Brain Female	brain

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