Variant report

Variant	rs34673745
Chromosome Location	chr3:100867641-100867642
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10470492	0.87[EUR][1000 genomes]
rs12696268	0.87[EUR][1000 genomes]
rs12696269	0.87[EUR][1000 genomes]
rs13061852	0.87[EUR][1000 genomes]
rs13084083	0.87[EUR][1000 genomes]
rs13085315	0.83[EUR][1000 genomes]
rs13085362	0.80[EUR][1000 genomes]
rs13099410	0.87[EUR][1000 genomes]
rs13099994	0.83[EUR][1000 genomes]
rs1876414	0.87[EUR][1000 genomes]
rs34262121	0.87[EUR][1000 genomes]
rs34452520	0.87[EUR][1000 genomes]
rs34975545	0.93[AMR][1000 genomes]
rs35628033	0.83[EUR][1000 genomes]
rs35783841	0.87[EUR][1000 genomes]
rs35865760	0.87[EUR][1000 genomes]
rs35904383	0.82[EUR][1000 genomes]
rs59729034	0.87[EUR][1000 genomes]
rs62274080	0.83[EUR][1000 genomes]
rs62280582	0.87[EUR][1000 genomes]
rs62280585	0.89[EUR][1000 genomes]
rs73141627	0.81[AMR][1000 genomes]
rs9917836	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877223	chr3:100817043-100871443	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100863200-100872400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:100866000-100868000	Enhancers	K562	blood
3	chr3:100867200-100869400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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