Variant report
| Variant | rs13099994 |
|---|---|
| Chromosome Location | chr3:100818423-100818424 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:100818159..100820573-chr3:100849584..100852444,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10470492 | 0.96[EUR][1000 genomes] |
| rs12696268 | 0.96[EUR][1000 genomes] |
| rs12696269 | 0.96[EUR][1000 genomes] |
| rs13061852 | 0.96[EUR][1000 genomes] |
| rs13084083 | 0.96[EUR][1000 genomes] |
| rs13085315 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13085362 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs13099410 | 0.96[EUR][1000 genomes] |
| rs1876414 | 0.96[EUR][1000 genomes] |
| rs34262121 | 0.96[EUR][1000 genomes] |
| rs34452520 | 0.96[EUR][1000 genomes] |
| rs34673745 | 0.83[EUR][1000 genomes] |
| rs35628033 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35783841 | 0.96[EUR][1000 genomes] |
| rs35865760 | 0.96[EUR][1000 genomes] |
| rs35904383 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs59729034 | 0.96[EUR][1000 genomes] |
| rs62274080 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62280582 | 0.96[EUR][1000 genomes] |
| rs62280585 | 1.00[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9833449 | 0.91[EUR][1000 genomes] |
| rs9917836 | 0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931417 | chr3:100547347-101183844 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv877222 | chr3:100715576-101038297 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv877223 | chr3:100817043-100871443 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:100817800-100819400 | Enhancers | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 2 | chr3:100817800-100819400 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
