Variant report

Variant	rs62280585
Chromosome Location	chr3:100843733-100843734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10470492	0.94[EUR][1000 genomes]
rs12696268	0.94[EUR][1000 genomes]
rs12696269	0.94[EUR][1000 genomes]
rs13061852	0.94[EUR][1000 genomes]
rs13084083	0.94[EUR][1000 genomes]
rs13085315	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs13085362	0.87[EUR][1000 genomes]
rs13099410	0.94[EUR][1000 genomes]
rs13099994	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1876414	0.94[EUR][1000 genomes]
rs34262121	0.94[EUR][1000 genomes]
rs34452520	0.94[EUR][1000 genomes]
rs34673745	0.89[EUR][1000 genomes]
rs35628033	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35783841	0.94[EUR][1000 genomes]
rs35865760	0.94[EUR][1000 genomes]
rs35904383	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs59729034	0.94[EUR][1000 genomes]
rs62274080	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62280582	0.94[EUR][1000 genomes]
rs9833449	0.82[EUR][1000 genomes]
rs9917836	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877223	chr3:100817043-100871443	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100839200-100847800	Weak transcription	Osteobl	bone
2	chr3:100843000-100843800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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