Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10470492	0.96[EUR][1000 genomes]
rs12696268	0.96[EUR][1000 genomes]
rs12696269	0.96[EUR][1000 genomes]
rs13061852	0.96[EUR][1000 genomes]
rs13084083	0.96[EUR][1000 genomes]
rs13085362	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13099410	0.96[EUR][1000 genomes]
rs13099994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1876414	0.96[EUR][1000 genomes]
rs34262121	0.96[EUR][1000 genomes]
rs34452520	0.96[EUR][1000 genomes]
rs34673745	0.83[EUR][1000 genomes]
rs35628033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35783841	0.96[EUR][1000 genomes]
rs35865760	0.96[EUR][1000 genomes]
rs35904383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59729034	0.96[EUR][1000 genomes]
rs62274080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62280582	0.96[EUR][1000 genomes]
rs62280585	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9833449	0.91[EUR][1000 genomes]
rs9917836	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100814200-100815200	Enhancers	Colon Smooth Muscle	Colon
2	chr3:100814200-100815200	Enhancers	Rectal Smooth Muscle	rectum
3	chr3:100814200-100815200	Enhancers	NHDF-Ad	bronchial
4	chr3:100814200-100815400	Enhancers	Osteobl	bone
5	chr3:100814400-100815000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:100814400-100815000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:100814400-100815600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:100814400-100815600	Enhancers	HSMMtube	muscle

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