Variant report

Variant	rs35000646
Chromosome Location	chr15:92574751-92574752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92574683..92576781-chr15:92577494..92579219,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12899498	0.85[AMR][1000 genomes]
rs12899673	0.86[ASN][1000 genomes]
rs12905838	0.92[ASN][1000 genomes]
rs12905905	0.86[ASN][1000 genomes]
rs12906289	0.83[ASN][1000 genomes]
rs12913189	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57842850	0.86[ASN][1000 genomes]
rs62011580	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71411125	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7163548	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7166185	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7181178	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:92566200-92576400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:92569800-92576600	Weak transcription	Brain Anterior Caudate	brain
4	chr15:92570600-92578000	Enhancers	Right Atrium	heart
5	chr15:92571000-92576800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:92571000-92578000	Enhancers	Brain Hippocampus Middle	brain
7	chr15:92571200-92575400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr15:92571800-92576600	Weak transcription	Aorta	Aorta
9	chr15:92572200-92581000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:92572800-92576600	Weak transcription	Fetal Brain Male	brain
11	chr15:92573000-92575000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr15:92573000-92575200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr15:92573000-92577200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:92573000-92578000	Enhancers	Brain Cingulate Gyrus	brain
15	chr15:92573200-92574800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr15:92573200-92574800	Enhancers	Brain Angular Gyrus	brain
17	chr15:92573200-92575000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:92573200-92575400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr15:92573200-92577800	Enhancers	Brain Substantia Nigra	brain
20	chr15:92573600-92574800	Weak transcription	Fetal Heart	heart
21	chr15:92573600-92576800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:92573800-92575000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr15:92573800-92575000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr15:92573800-92576600	Weak transcription	Fetal Lung	lung
25	chr15:92573800-92579400	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr15:92574000-92574800	Enhancers	Pancreas	Pancrea
27	chr15:92574000-92575000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr15:92574000-92576600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:92574000-92576600	Weak transcription	Ovary	ovary
30	chr15:92574200-92574800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr15:92574200-92575200	Weak transcription	Lung	lung
32	chr15:92574200-92575200	Weak transcription	Right Ventricle	heart
33	chr15:92574200-92576400	Weak transcription	Adipose Nuclei	Adipose
34	chr15:92574200-92580600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr15:92574200-92585800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:92574400-92575600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:92574400-92575600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr15:92574600-92575000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:92574600-92575000	Enhancers	Spleen	Spleen
40	chr15:92574600-92575200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr15:92574600-92575400	Enhancers	H1 Cell Line	embryonic stem cell
42	chr15:92574600-92575400	Enhancers	Esophagus	oesophagus
43	chr15:92574600-92575800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr15:92574600-92576000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:92574600-92579400	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links