Variant report

Variant	rs71411125
Chromosome Location	chr15:92573611-92573612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12899498	0.88[AMR][1000 genomes]
rs12899673	0.86[ASN][1000 genomes]
rs12905838	0.94[ASN][1000 genomes]
rs12905905	0.86[ASN][1000 genomes]
rs12906289	0.84[ASN][1000 genomes]
rs12913189	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35000646	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57842850	0.89[ASN][1000 genomes]
rs62011580	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7163548	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7166185	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7181178	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:92562800-92574600	Weak transcription	Esophagus	oesophagus
3	chr15:92566200-92576400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:92569800-92576600	Weak transcription	Brain Anterior Caudate	brain
5	chr15:92570600-92574200	Enhancers	Adipose Nuclei	Adipose
6	chr15:92570600-92578000	Enhancers	Right Atrium	heart
7	chr15:92570800-92573800	Enhancers	Fetal Lung	lung
8	chr15:92570800-92573800	Enhancers	Left Ventricle	heart
9	chr15:92570800-92574000	Enhancers	Ovary	ovary
10	chr15:92571000-92574000	Weak transcription	Pancreas	Pancrea
11	chr15:92571000-92576800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:92571000-92578000	Enhancers	Brain Hippocampus Middle	brain
13	chr15:92571200-92575400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:92571400-92574600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:92571800-92574000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:92571800-92576600	Weak transcription	Aorta	Aorta
17	chr15:92572000-92573800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:92572200-92574200	Enhancers	Right Ventricle	heart
19	chr15:92572200-92581000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:92572400-92573800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:92572400-92574000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:92572600-92574200	Enhancers	Stomach Smooth Muscle	stomach
23	chr15:92572800-92576600	Weak transcription	Fetal Brain Male	brain
24	chr15:92573000-92575000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr15:92573000-92575200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr15:92573000-92577200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:92573000-92578000	Enhancers	Brain Cingulate Gyrus	brain
28	chr15:92573200-92573800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr15:92573200-92574200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr15:92573200-92574200	Enhancers	Lung	lung
31	chr15:92573200-92574600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:92573200-92574800	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr15:92573200-92574800	Enhancers	Brain Angular Gyrus	brain
34	chr15:92573200-92575000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:92573200-92575400	Enhancers	H9 Cell Line	embryonic stem cell
36	chr15:92573200-92577800	Enhancers	Brain Substantia Nigra	brain
37	chr15:92573400-92574600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:92573400-92574600	Weak transcription	Spleen	Spleen
39	chr15:92573600-92573800	Enhancers	Duodenum Mucosa	Duodenum
40	chr15:92573600-92574800	Weak transcription	Fetal Heart	heart
41	chr15:92573600-92576800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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