Variant report

Variant	rs7163548
Chromosome Location	chr15:92566887-92566888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12899498	0.82[AMR][1000 genomes]
rs12899673	0.85[ASN][1000 genomes]
rs12905838	0.82[ASN][1000 genomes]
rs12905905	0.85[ASN][1000 genomes]
rs12906289	0.82[ASN][1000 genomes]
rs12913189	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35000646	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57842850	0.87[ASN][1000 genomes]
rs62011580	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71411125	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7166185	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7181178	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv984212	chr15:92562075-92570410	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92555600-92570600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:92557800-92567000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:92558000-92571200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:92558600-92568600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:92562000-92567800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:92562600-92570600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:92562800-92569600	Enhancers	Fetal Heart	heart
9	chr15:92562800-92574600	Weak transcription	Esophagus	oesophagus
10	chr15:92563800-92567000	Weak transcription	Brain Substantia Nigra	brain
11	chr15:92563800-92568200	Enhancers	Aorta	Aorta
12	chr15:92564000-92567200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:92564600-92570000	Enhancers	Brain Hippocampus Middle	brain
14	chr15:92564600-92571400	Weak transcription	Small Intestine	intestine
15	chr15:92564800-92567000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:92565200-92569200	Weak transcription	Spleen	Spleen
17	chr15:92565200-92571400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr15:92565200-92572000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:92565200-92573400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr15:92565400-92567200	Weak transcription	Brain Anterior Caudate	brain
21	chr15:92565400-92568200	Weak transcription	Ovary	ovary
22	chr15:92565400-92572400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr15:92566200-92567200	Weak transcription	Right Atrium	heart
24	chr15:92566200-92570600	Weak transcription	Brain Angular Gyrus	brain
25	chr15:92566200-92570800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr15:92566200-92576400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr15:92566400-92568000	Weak transcription	Left Ventricle	heart
28	chr15:92566400-92568600	Weak transcription	Lung	lung
29	chr15:92566600-92567000	Weak transcription	Right Ventricle	heart
30	chr15:92566600-92568200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:92566800-92567800	Enhancers	Adipose Nuclei	Adipose

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