Variant report

Variant	rs35062852
Chromosome Location	chr14:64958638-64958639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64958246..64960870-chr14:64967867..64972086,4	K562	blood:
2	chr14:64957408..64961833-chr14:64968982..64972745,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10498514	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11844318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848452	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849167	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851751	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101851	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17101854	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101915	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101919	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17751805	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs2123464	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295638	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2295639	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs35287494	0.88[LWK][hapmap]
rs45472695	0.94[EUR][1000 genomes]
rs45498699	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45523434	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45608633	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57092929	0.89[EUR][1000 genomes]
rs59096477	1.00[EUR][1000 genomes]
rs59397130	1.00[EUR][1000 genomes]
rs59403712	1.00[EUR][1000 genomes]
rs59422037	1.00[EUR][1000 genomes]
rs59686564	1.00[EUR][1000 genomes]
rs59770063	1.00[EUR][1000 genomes]
rs60063929	1.00[EUR][1000 genomes]
rs60806768	1.00[EUR][1000 genomes]
rs61107070	1.00[EUR][1000 genomes]
rs61288516	1.00[ASN][1000 genomes]
rs61290360	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73263767	1.00[EUR][1000 genomes]
rs73263770	1.00[EUR][1000 genomes]
rs73263773	1.00[EUR][1000 genomes]
rs73263781	1.00[EUR][1000 genomes]
rs73263782	1.00[EUR][1000 genomes]
rs73277968	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277975	1.00[EUR][1000 genomes]
rs73277976	1.00[EUR][1000 genomes]
rs73277977	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277979	1.00[EUR][1000 genomes]
rs73277985	1.00[EUR][1000 genomes]
rs8019215	1.00[EUR][1000 genomes]
rs8022867	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902022	chr14:64926581-64958638	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64933200-64968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:64933400-64968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:64936800-64968400	Weak transcription	Fetal Brain Male	brain
4	chr14:64949600-64958800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:64950000-64968200	Weak transcription	Colonic Mucosa	Colon
6	chr14:64950400-64958800	Strong transcription	Dnd41	blood
7	chr14:64950400-64963000	Strong transcription	Fetal Thymus	thymus
8	chr14:64950600-64967800	Weak transcription	HUVEC	blood vessel
9	chr14:64951800-64958800	Strong transcription	Fetal Muscle Trunk	muscle
10	chr14:64952200-64968000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr14:64953000-64960200	Weak transcription	K562	blood
12	chr14:64953200-64968200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:64953600-64958800	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:64953600-64959200	Strong transcription	Fetal Stomach	stomach
15	chr14:64953600-64959600	Strong transcription	Primary T cells from cord blood	blood
16	chr14:64953600-64959800	Strong transcription	GM12878-XiMat	blood
17	chr14:64954000-64959200	Strong transcription	Fetal Intestine Small	intestine
18	chr14:64954600-64962000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:64954600-64966600	Weak transcription	HepG2	liver
20	chr14:64954600-64968000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr14:64954600-64968200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:64954600-64968400	Weak transcription	Esophagus	oesophagus
23	chr14:64954600-64968400	Weak transcription	Gastric	stomach
24	chr14:64954600-64968400	Weak transcription	Pancreas	Pancrea
25	chr14:64954800-64960600	Weak transcription	Ovary	ovary
26	chr14:64954800-64962000	Weak transcription	Aorta	Aorta
27	chr14:64954800-64966200	Weak transcription	Small Intestine	intestine
28	chr14:64954800-64966400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr14:64954800-64966400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr14:64954800-64968200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr14:64954800-64968200	Weak transcription	HSMMtube	muscle
32	chr14:64954800-64968400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr14:64954800-64968400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr14:64954800-64968400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr14:64954800-64968400	Weak transcription	Spleen	Spleen
36	chr14:64954800-64969600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:64955000-64961800	Weak transcription	Brain Angular Gyrus	brain
38	chr14:64955000-64968000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:64955000-64968200	Weak transcription	Brain Substantia Nigra	brain
40	chr14:64955200-64959600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr14:64955200-64961800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr14:64955200-64963600	Weak transcription	NH-A	brain
43	chr14:64955200-64964600	Weak transcription	A549	lung
44	chr14:64955200-64967800	Weak transcription	NHDF-Ad	bronchial
45	chr14:64955200-64968000	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:64955200-64968000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr14:64955200-64968200	Weak transcription	Right Ventricle	heart
48	chr14:64955400-64959400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr14:64955400-64961800	Weak transcription	Colon Smooth Muscle	Colon
50	chr14:64955400-64966600	Weak transcription	Duodenum Mucosa	Duodenum

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