Variant report

Variant	rs73277985
Chromosome Location	chr14:64895687-64895688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:64895648-64895836	K562	blood:	n/a	n/a

Variant related genes	Relation type
MTHFD1	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10498514	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11844318	0.94[EUR][1000 genomes]
rs11848452	0.88[EUR][1000 genomes]
rs11849167	0.88[EUR][1000 genomes]
rs11850644	1.00[EUR][1000 genomes]
rs11851751	1.00[EUR][1000 genomes]
rs17101851	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17101854	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17101915	0.94[EUR][1000 genomes]
rs17101919	0.94[EUR][1000 genomes]
rs2123464	0.94[EUR][1000 genomes]
rs2295638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2295639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35062852	1.00[EUR][1000 genomes]
rs45472695	0.94[EUR][1000 genomes]
rs45498699	0.94[EUR][1000 genomes]
rs45523434	0.94[EUR][1000 genomes]
rs45608633	0.84[EUR][1000 genomes]
rs45618332	0.83[AFR][1000 genomes]
rs57092929	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58001647	0.82[AFR][1000 genomes]
rs59096477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59397130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59403712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59422037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59686564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59770063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60063929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60806768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61107070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61290360	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73263765	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73263767	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277968	1.00[EUR][1000 genomes]
rs73277970	1.00[EUR][1000 genomes]
rs73277972	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277977	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8016556	0.81[AFR][1000 genomes]
rs8019215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8022537	0.81[AFR][1000 genomes]
rs8022545	0.81[AFR][1000 genomes]
rs8022867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64856000-64913000	Weak transcription	Small Intestine	intestine
2	chr14:64856200-64931200	Weak transcription	Stomach Mucosa	stomach
3	chr14:64861800-64931600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:64862600-64898200	Weak transcription	Fetal Heart	heart
5	chr14:64862600-64905200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:64867200-64927000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:64867200-64929600	Strong transcription	Dnd41	blood
8	chr14:64874000-64928400	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:64875400-64912000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:64875400-64913200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr14:64876400-64911800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr14:64877000-64902000	Strong transcription	Fetal Stomach	stomach
13	chr14:64877000-64927000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:64877000-64929400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:64877200-64895800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr14:64877400-64928200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:64877800-64901000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr14:64877800-64905000	Strong transcription	Adipose Nuclei	Adipose
19	chr14:64877800-64911200	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr14:64877800-64929200	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr14:64878200-64921200	Strong transcription	Liver	Liver
22	chr14:64878600-64899600	Strong transcription	Duodenum Mucosa	Duodenum
23	chr14:64878600-64912200	Strong transcription	Fetal Muscle Trunk	muscle
24	chr14:64878800-64896600	Strong transcription	Fetal Intestine Large	intestine
25	chr14:64878800-64912000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:64879600-64910200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr14:64881400-64896400	Strong transcription	H9 Cell Line	embryonic stem cell
28	chr14:64881600-64912600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr14:64881600-64929000	Strong transcription	Fetal Thymus	thymus
30	chr14:64882600-64911200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr14:64884400-64904800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr14:64886200-64898200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:64886200-64899600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr14:64886800-64905200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr14:64887600-64898200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr14:64887800-64911000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr14:64888000-64898000	Weak transcription	Brain Hippocampus Middle	brain
38	chr14:64888000-64899800	Strong transcription	A549	lung
39	chr14:64888000-64911400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr14:64888000-64923000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:64888200-64897400	Weak transcription	NHDF-Ad	bronchial
42	chr14:64888200-64900200	Weak transcription	Spleen	Spleen
43	chr14:64888200-64901200	Weak transcription	Aorta	Aorta
44	chr14:64888400-64920400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr14:64888800-64896600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:64888800-64911000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr14:64888800-64913200	Strong transcription	Hela-S3	cervix
48	chr14:64889000-64895800	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr14:64889000-64897200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr14:64889200-64896400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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