Variant report

Variant	rs73277970
Chromosome Location	chr14:64889841-64889842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr14:64889387-64890069	GM12878	blood:	n/a	n/a
2	RUNX3	chr14:64889319-64890167	GM12878	blood:	n/a	n/a
3	POLR2A	chr14:64889464-64889884	Hela-S3	cervix:	n/a	n/a
4	RUNX3	chr14:64889788-64890085	GM12878	blood:	n/a	n/a
5	CREB1	chr14:64889478-64890079	GM12878	blood:	n/a	n/a
6	NFATC1	chr14:64889294-64889927	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64860617..64863426-chr14:64887492..64890180,3	MCF-7	breast:

Variant related genes	Relation type
MTHFD1	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10498514	1.00[EUR][1000 genomes]
rs11844318	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848452	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849167	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851751	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101851	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17101854	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101915	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101919	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17751805	1.00[ASN][1000 genomes]
rs2123464	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295638	1.00[EUR][1000 genomes]
rs2295639	1.00[EUR][1000 genomes]
rs35062852	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45472695	0.94[EUR][1000 genomes]
rs45498699	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45523434	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45608633	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57092929	0.89[EUR][1000 genomes]
rs59096477	1.00[EUR][1000 genomes]
rs59397130	1.00[EUR][1000 genomes]
rs59403712	1.00[EUR][1000 genomes]
rs59422037	1.00[EUR][1000 genomes]
rs59686564	1.00[EUR][1000 genomes]
rs59770063	1.00[EUR][1000 genomes]
rs60063929	1.00[EUR][1000 genomes]
rs60806768	1.00[EUR][1000 genomes]
rs61107070	1.00[EUR][1000 genomes]
rs61288516	1.00[ASN][1000 genomes]
rs61290360	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73263767	1.00[EUR][1000 genomes]
rs73263770	1.00[EUR][1000 genomes]
rs73263773	1.00[EUR][1000 genomes]
rs73263781	1.00[EUR][1000 genomes]
rs73263782	1.00[EUR][1000 genomes]
rs73277968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277972	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277975	1.00[EUR][1000 genomes]
rs73277976	1.00[EUR][1000 genomes]
rs73277977	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277979	1.00[EUR][1000 genomes]
rs73277985	1.00[EUR][1000 genomes]
rs8019215	1.00[EUR][1000 genomes]
rs8022867	1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64856000-64913000	Weak transcription	Small Intestine	intestine
2	chr14:64856200-64931200	Weak transcription	Stomach Mucosa	stomach
3	chr14:64861800-64890600	Weak transcription	Colonic Mucosa	Colon
4	chr14:64861800-64931600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:64862600-64898200	Weak transcription	Fetal Heart	heart
6	chr14:64862600-64905200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:64867200-64927000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:64867200-64929600	Strong transcription	Dnd41	blood
9	chr14:64874000-64928400	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:64875400-64912000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr14:64875400-64913200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:64876400-64911800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:64877000-64902000	Strong transcription	Fetal Stomach	stomach
14	chr14:64877000-64927000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:64877000-64929400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:64877200-64895800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr14:64877400-64928200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:64877800-64890800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:64877800-64901000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr14:64877800-64905000	Strong transcription	Adipose Nuclei	Adipose
21	chr14:64877800-64911200	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr14:64877800-64929200	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr14:64878200-64921200	Strong transcription	Liver	Liver
24	chr14:64878600-64899600	Strong transcription	Duodenum Mucosa	Duodenum
25	chr14:64878600-64912200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr14:64878800-64896600	Strong transcription	Fetal Intestine Large	intestine
27	chr14:64878800-64912000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:64879000-64890200	Strong transcription	Primary B cells from cord blood	blood
29	chr14:64879600-64910200	Strong transcription	Primary B cells from peripheral blood	blood
30	chr14:64880400-64894400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr14:64881400-64896400	Strong transcription	H9 Cell Line	embryonic stem cell
32	chr14:64881600-64895000	Strong transcription	HMEC	breast
33	chr14:64881600-64895400	Strong transcription	HepG2	liver
34	chr14:64881600-64912600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr14:64881600-64929000	Strong transcription	Fetal Thymus	thymus
36	chr14:64881800-64890000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr14:64881800-64890600	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr14:64881800-64891600	Strong transcription	Primary hematopoietic stem cells	blood
39	chr14:64882000-64894800	Strong transcription	Primary T cells from cord blood	blood
40	chr14:64882200-64891200	Strong transcription	Ovary	ovary
41	chr14:64882400-64890000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr14:64882600-64911200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr14:64884200-64895000	Strong transcription	Fetal Lung	lung
44	chr14:64884400-64904800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr14:64886200-64898200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:64886200-64899600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr14:64886400-64890200	Strong transcription	K562	blood
48	chr14:64886800-64905200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr14:64887000-64894800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr14:64887400-64892800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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