Variant report

Variant	rs61107070
Chromosome Location	chr14:64896783-64896784
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:90)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:90 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr14:64896627-64897052	A549	lung:	n/a	n/a
2	GABPA	chr14:64896770-64897012	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr14:64896775-64897048	GM19240	blood:	n/a	n/a
4	CTCF	chr14:64896664-64897080	HCT-116	colon:	n/a	n/a
5	RAD21	chr14:64896754-64897031	SK-N-SH_RA	brain:	n/a	n/a
6	MXI1	chr14:64896676-64896918	GM12878	blood:	n/a	n/a
7	CTCF	chr14:64896775-64897025	K562	blood:	n/a	n/a
8	E2F4	chr14:64896755-64896939	MCF10A-Er-Src	breast:	n/a	n/a
9	SMC3	chr14:64896756-64897000	K562	blood:	n/a	n/a
10	RAD21	chr14:64896764-64897030	MCF-7	breast:	n/a	n/a
11	CTCF	chr14:64896746-64896998	SK-N-SH_RA	brain:	n/a	n/a
12	CTCF	chr14:64896660-64896810	HVMF	connective:	n/a	n/a
13	CTCF	chr14:64896139-64897114	A549	lung:	n/a	n/a
14	CTCF	chr14:64896689-64897096	GM12878	blood:	n/a	n/a
15	RAD21	chr14:64896742-64897066	SK-N-SH_RA	brain:	n/a	n/a
16	CTCF	chr14:64896783-64897021	HepG2	liver:	n/a	n/a
17	RAD21	chr14:64896679-64897122	ECC-1	luminal epithelium:	n/a	n/a
18	CTCF	chr14:64896780-64897076	GM12891	blood:	n/a	n/a
19	CTCF	chr14:64896704-64897073	IMR90	lung:	n/a	n/a
20	CTCF	chr14:64896774-64897053	MCF-7	breast:	n/a	n/a
21	RAD21	chr14:64896736-64897063	HepG2	liver:	n/a	n/a
22	CTCF	chr14:64896755-64897021	HUVEC	blood vessel:	n/a	n/a
23	ZNF143	chr14:64896732-64897077	H1-hESC	embryonic stem cell:	n/a	n/a
24	MAX	chr14:64896661-64897118	MCF-7	breast:	n/a	n/a
25	CTCF	chr14:64896768-64897021	GM10248	blood:	n/a	n/a
26	SMC3	chr14:64896731-64897050	HepG2	liver:	n/a	n/a
27	CTCF	chr14:64896743-64897053	Medullo	brain:	n/a	n/a
28	CTCF	chr14:64896781-64897065	GM12892	blood:	n/a	n/a
29	CTCF	chr14:64896706-64897083	H1-hESC	embryonic stem cell:	n/a	n/a
30	CTCF	chr14:64896765-64896993	ECC-1	luminal epithelium:	n/a	n/a
31	CTCF	chr14:64896775-64897039	MCF-7	breast:	n/a	n/a
32	CTCF	chr14:64896712-64897012	T-47D	breast:	n/a	n/a
33	SMC3	chr14:64896729-64897057	Hela-S3	cervix:	n/a	n/a
34	MYC	chr14:64896556-64896973	MCF10A-Er-Src	breast:	n/a	n/a
35	RAD21	chr14:64896769-64897093	H1-hESC	embryonic stem cell:	n/a	n/a
36	MYC	chr14:64896739-64896995	MCF10A-Er-Src	breast:	n/a	n/a
37	RAD21	chr14:64896588-64897138	HCT-116	colon:	n/a	n/a
38	ZNF143	chr14:64896711-64897070	GM12878	blood:	n/a	n/a
39	RAD21	chr14:64896604-64897045	HCT-116	colon:	n/a	n/a
40	RAD21	chr14:64896651-64897019	HepG2	liver:	n/a	n/a
41	CTCF	chr14:64896772-64897071	H1-hESC	embryonic stem cell:	n/a	n/a
42	ZNF143	chr14:64896778-64896994	Hela-S3	cervix:	n/a	n/a
43	SMC3	chr14:64896715-64897074	GM12878	blood:	n/a	n/a
44	RAD21	chr14:64896754-64897029	H1-hESC	embryonic stem cell:	n/a	n/a
45	NR2F2	chr14:64896623-64897134	MCF-7	breast:	n/a	n/a
46	CTCF	chr14:64896595-64897073	K562	blood:	n/a	n/a
47	CTCF	chr14:64896763-64897025	GM13977	blood:	n/a	n/a
48	ZNF143	chr14:64896766-64897038	K562	blood:	n/a	n/a
49	CTCF	chr14:64896769-64897037	Lung_OC	lung:	n/a	n/a
50	MXI1	chr14:64896540-64897142	SK-N-SH	brain:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:64896764..64897269-chr14:65103097..65103983,2	MCF-7	breast:
2	chr14:64810615..64811473-chr14:64895959..64896863,2	MCF-7	breast:
3	chr14:64896419..64897383-chr14:64977488..64978469,2	MCF-7	breast:
4	chr14:64810629..64811483-chr14:64896711..64897466,4	K562	blood:

No data

Variant related genes	Relation type
MTHFD1	TF binding region

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10498514	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844318	0.94[EUR][1000 genomes]
rs11848452	0.88[EUR][1000 genomes]
rs11849167	0.88[EUR][1000 genomes]
rs11850644	1.00[EUR][1000 genomes]
rs11851751	1.00[EUR][1000 genomes]
rs17101851	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101854	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17101915	0.94[EUR][1000 genomes]
rs17101919	0.94[EUR][1000 genomes]
rs2123464	0.94[EUR][1000 genomes]
rs2236223	0.87[ASN][1000 genomes]
rs2295638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35062852	1.00[EUR][1000 genomes]
rs45470505	0.87[ASN][1000 genomes]
rs45472695	0.94[EUR][1000 genomes]
rs45498699	0.94[EUR][1000 genomes]
rs45523434	0.94[EUR][1000 genomes]
rs45564031	0.87[ASN][1000 genomes]
rs45608633	0.84[EUR][1000 genomes]
rs45618332	0.83[AFR][1000 genomes]
rs45621638	0.87[ASN][1000 genomes]
rs57092929	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57464458	0.87[ASN][1000 genomes]
rs57528409	0.87[ASN][1000 genomes]
rs57567940	0.87[ASN][1000 genomes]
rs57778315	0.87[ASN][1000 genomes]
rs58001647	0.82[AFR][1000 genomes]
rs58680755	0.87[ASN][1000 genomes]
rs58895407	0.87[ASN][1000 genomes]
rs59096477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59397130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59403712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59422037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59470472	0.87[ASN][1000 genomes]
rs59686564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59770063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60063929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60441024	0.87[ASN][1000 genomes]
rs60531860	0.87[ASN][1000 genomes]
rs60736633	0.87[ASN][1000 genomes]
rs60806768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61290360	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73263765	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73263767	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73263770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73263773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73263781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73263782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277968	1.00[EUR][1000 genomes]
rs73277970	1.00[EUR][1000 genomes]
rs73277972	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277977	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056433	0.87[ASN][1000 genomes]
rs74056441	0.87[ASN][1000 genomes]
rs74056444	0.87[ASN][1000 genomes]
rs74058135	0.87[ASN][1000 genomes]
rs8016556	0.81[AFR][1000 genomes]
rs8019215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022537	0.81[AFR][1000 genomes]
rs8022545	0.81[AFR][1000 genomes]
rs8022867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64856000-64913000	Weak transcription	Small Intestine	intestine
2	chr14:64856200-64931200	Weak transcription	Stomach Mucosa	stomach
3	chr14:64861800-64931600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:64862600-64898200	Weak transcription	Fetal Heart	heart
5	chr14:64862600-64905200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:64867200-64927000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:64867200-64929600	Strong transcription	Dnd41	blood
8	chr14:64874000-64928400	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:64875400-64912000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:64875400-64913200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr14:64876400-64911800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr14:64877000-64902000	Strong transcription	Fetal Stomach	stomach
13	chr14:64877000-64927000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:64877000-64929400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:64877400-64928200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:64877800-64901000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr14:64877800-64905000	Strong transcription	Adipose Nuclei	Adipose
18	chr14:64877800-64911200	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:64877800-64929200	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr14:64878200-64921200	Strong transcription	Liver	Liver
21	chr14:64878600-64899600	Strong transcription	Duodenum Mucosa	Duodenum
22	chr14:64878600-64912200	Strong transcription	Fetal Muscle Trunk	muscle
23	chr14:64878800-64912000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr14:64879600-64910200	Strong transcription	Primary B cells from peripheral blood	blood
25	chr14:64881600-64912600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr14:64881600-64929000	Strong transcription	Fetal Thymus	thymus
27	chr14:64882600-64911200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr14:64884400-64904800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:64886200-64898200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:64886200-64899600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr14:64886800-64905200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr14:64887600-64898200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr14:64887800-64911000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr14:64888000-64898000	Weak transcription	Brain Hippocampus Middle	brain
35	chr14:64888000-64899800	Strong transcription	A549	lung
36	chr14:64888000-64911400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr14:64888000-64923000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:64888200-64897400	Weak transcription	NHDF-Ad	bronchial
39	chr14:64888200-64900200	Weak transcription	Spleen	Spleen
40	chr14:64888200-64901200	Weak transcription	Aorta	Aorta
41	chr14:64888400-64920400	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr14:64888800-64911000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr14:64888800-64913200	Strong transcription	Hela-S3	cervix
44	chr14:64889000-64897200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr14:64890000-64905600	Weak transcription	Fetal Kidney	kidney
46	chr14:64890200-64899000	Strong transcription	GM12878-XiMat	blood
47	chr14:64890200-64901200	Strong transcription	Fetal Intestine Small	intestine
48	chr14:64891200-64928600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr14:64891400-64903200	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr14:64891400-64911400	Strong transcription	Fetal Muscle Leg	muscle

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