Variant report

Variant	rs35069238
Chromosome Location	chr4:150217539-150217540
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13103522	0.84[EUR][1000 genomes]
rs13106348	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13116586	1.00[ASN][1000 genomes]
rs13118544	0.84[EUR][1000 genomes]
rs13141615	0.84[EUR][1000 genomes]
rs13141927	0.84[EUR][1000 genomes]
rs34737891	0.84[EUR][1000 genomes]
rs35692179	0.81[EUR][1000 genomes]
rs35918692	0.84[EUR][1000 genomes]
rs36016702	1.00[AFR][1000 genomes]
rs36016999	0.84[EUR][1000 genomes]
rs4835575	0.84[EUR][1000 genomes]
rs6535674	0.84[EUR][1000 genomes]
rs6829488	0.84[EUR][1000 genomes]
rs6847475	0.84[EUR][1000 genomes]
rs6855590	0.84[EUR][1000 genomes]
rs71618313	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880249	chr4:150156579-150280221	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1016977	chr4:150173255-150605595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537298	chr4:150173255-150605595	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150216600-150218000	Enhancers	HSMMtube	muscle
2	chr4:150216800-150217800	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:150217400-150218400	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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