Variant report
| Variant | rs71618313 |
|---|---|
| Chromosome Location | chr4:150218045-150218046 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs13101536 | 0.81[ASN][1000 genomes] |
| rs13103522 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13106348 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13118544 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13141615 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13141927 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17026283 | 0.90[ASN][1000 genomes] |
| rs34737891 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs35069238 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs35692179 | 0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs35918692 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs36016999 | 1.00[EUR][1000 genomes] |
| rs4629424 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4835575 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs61140595 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6535674 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6829488 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6845814 | 0.83[ASN][1000 genomes] |
| rs6847475 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6855590 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880249 | chr4:150156579-150280221 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016977 | chr4:150173255-150605595 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv537298 | chr4:150173255-150605595 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:150217400-150218400 | Enhancers | Fetal Kidney | kidney |
