Variant report
| Variant | rs61140595 |
|---|---|
| Chromosome Location | chr4:150292185-150292186 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:150291870..150292862-chr4:150818587..150819565,7 | MCF-7 | breast: | |
| 2 | chr4:150291992..150292625-chr4:150817304..150817959,3 | MCF-7 | breast: | |
| 3 | chr4:150292063..150292789-chr4:150470806..150471523,3 | MCF-7 | breast: | |
| 4 | chr4:150291755..150292700-chr4:150817288..150818294,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234828 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs13101536 | 1.00[ASN][1000 genomes] |
| rs13103522 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13106348 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13118544 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13141615 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13141927 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34737891 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35692179 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35918692 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36016999 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4267715 | 0.90[ASN][1000 genomes] |
| rs4629424 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4835575 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6535674 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6829488 | 0.87[EUR][1000 genomes] |
| rs6847475 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6855590 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs71618313 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016977 | chr4:150173255-150605595 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv537298 | chr4:150173255-150605595 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1026797 | chr4:150246932-151217137 | Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:150291200-150293000 | Enhancers | Liver | Liver |
