Variant report

Variant	rs13106348
Chromosome Location	chr4:150262788-150262789
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13101536	1.00[ASN][1000 genomes]
rs13103522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13118544	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141615	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141927	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34737891	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35069238	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35692179	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35918692	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36016999	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4267715	0.90[ASN][1000 genomes]
rs4629424	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61140595	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829488	1.00[EUR][1000 genomes]
rs6847475	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855590	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71618313	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880249	chr4:150156579-150280221	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1016977	chr4:150173255-150605595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537298	chr4:150173255-150605595	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150262000-150262800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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