Variant report
| Variant | rs6829488 |
|---|---|
| Chromosome Location | chr4:150225615-150225616 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1157188 | 0.86[AFR][1000 genomes] |
| rs13103522 | 0.98[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13106348 | 1.00[EUR][1000 genomes] |
| rs13118544 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13141615 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13141927 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1319110 | 0.82[AFR][1000 genomes] |
| rs17026127 | 0.82[AFR][1000 genomes] |
| rs34737891 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35069238 | 0.84[EUR][1000 genomes] |
| rs35692179 | 0.97[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs35918692 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs36016999 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4629424 | 0.94[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4835575 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59501220 | 0.80[AFR][1000 genomes] |
| rs61140595 | 0.87[EUR][1000 genomes] |
| rs6535674 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs67730534 | 0.80[AFR][1000 genomes] |
| rs6845814 | 0.99[AFR][1000 genomes] |
| rs6847475 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6855590 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs71618313 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880249 | chr4:150156579-150280221 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016977 | chr4:150173255-150605595 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv537298 | chr4:150173255-150605595 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:150225600-150226600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
