Variant report

Variant	rs67730534
Chromosome Location	chr4:150290299-150290300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRBA-5	chr4:150290151-150290384	l_2752_chr4:150288512-150290384_testes

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11099727	0.83[ASN][1000 genomes]
rs1157188	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12374208	0.81[ASN][1000 genomes]
rs12374271	0.81[ASN][1000 genomes]
rs13103522	0.82[AFR][1000 genomes]
rs13118544	0.83[AFR][1000 genomes]
rs13135997	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13141632	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1319110	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17026127	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17624426	0.83[ASN][1000 genomes]
rs17686333	0.83[ASN][1000 genomes]
rs34737891	0.83[AFR][1000 genomes]
rs35692179	0.83[AFR][1000 genomes]
rs35918692	0.83[AFR][1000 genomes]
rs36016999	0.83[AFR][1000 genomes]
rs4629424	0.85[AFR][1000 genomes]
rs4835575	0.83[AFR][1000 genomes]
rs56112611	0.81[ASN][1000 genomes]
rs59501220	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6535674	0.83[AFR][1000 genomes]
rs6829488	0.80[AFR][1000 genomes]
rs6847475	0.83[AFR][1000 genomes]
rs6855590	0.80[AFR][1000 genomes]
rs71622754	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs725653	0.81[ASN][1000 genomes]
rs72721883	0.83[ASN][1000 genomes]
rs72721885	0.83[ASN][1000 genomes]
rs72721895	0.83[ASN][1000 genomes]
rs72724014	0.84[ASN][1000 genomes]
rs72724016	0.86[ASN][1000 genomes]
rs72724017	0.85[ASN][1000 genomes]
rs72724018	0.86[ASN][1000 genomes]
rs72724021	0.86[ASN][1000 genomes]
rs72724022	0.86[ASN][1000 genomes]
rs72724023	0.86[ASN][1000 genomes]
rs72724025	0.85[ASN][1000 genomes]
rs72724036	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016977	chr4:150173255-150605595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv537298	chr4:150173255-150605595	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3367937	chr4:150289202-150291300	Enhancers	lncRNA	n/a	inside rSNPs	n/a
5	esv3403548	chr4:150289552-150290850	Inactive region	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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