Variant report

Variant	rs59501220
Chromosome Location	chr4:150292119-150292120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:150291870..150292862-chr4:150818587..150819565,7	MCF-7	breast:
2	chr4:150291992..150292625-chr4:150817304..150817959,3	MCF-7	breast:
3	chr4:150292063..150292789-chr4:150470806..150471523,3	MCF-7	breast:
4	chr4:150291755..150292700-chr4:150817288..150818294,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234828	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11099727	0.84[ASN][1000 genomes]
rs1157188	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12374208	0.82[ASN][1000 genomes]
rs12374271	0.82[ASN][1000 genomes]
rs13103522	0.82[AFR][1000 genomes]
rs13118544	0.83[AFR][1000 genomes]
rs13135997	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13141632	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1319110	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17026127	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17624426	0.84[ASN][1000 genomes]
rs17686333	0.84[ASN][1000 genomes]
rs34737891	0.83[AFR][1000 genomes]
rs35692179	0.83[AFR][1000 genomes]
rs35918692	0.83[AFR][1000 genomes]
rs36016999	0.83[AFR][1000 genomes]
rs4629424	0.85[AFR][1000 genomes]
rs4835575	0.83[AFR][1000 genomes]
rs56112611	0.82[ASN][1000 genomes]
rs6535674	0.83[AFR][1000 genomes]
rs67730534	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6829488	0.80[AFR][1000 genomes]
rs6847475	0.83[AFR][1000 genomes]
rs6855590	0.80[AFR][1000 genomes]
rs71622754	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs725653	0.82[ASN][1000 genomes]
rs72721883	0.84[ASN][1000 genomes]
rs72721885	0.84[ASN][1000 genomes]
rs72721895	0.84[ASN][1000 genomes]
rs72724014	0.85[ASN][1000 genomes]
rs72724016	0.87[ASN][1000 genomes]
rs72724017	0.86[ASN][1000 genomes]
rs72724018	0.87[ASN][1000 genomes]
rs72724021	0.87[ASN][1000 genomes]
rs72724022	0.87[ASN][1000 genomes]
rs72724023	0.87[ASN][1000 genomes]
rs72724025	0.86[ASN][1000 genomes]
rs72724036	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016977	chr4:150173255-150605595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv537298	chr4:150173255-150605595	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150291200-150293000	Enhancers	Liver	Liver

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