Variant report

Variant	rs13141632
Chromosome Location	chr4:150267536-150267537
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11099727	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1157188	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12374208	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12374271	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13135997	0.98[ASN][1000 genomes]
rs1319110	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17026127	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17624426	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17686333	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56112611	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59501220	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67730534	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71622754	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs725653	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72721875	0.81[ASN][1000 genomes]
rs72721883	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72721885	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72721895	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72724014	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72724016	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72724017	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72724018	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72724021	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72724022	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72724023	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72724025	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72724036	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880249	chr4:150156579-150280221	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1016977	chr4:150173255-150605595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537298	chr4:150173255-150605595	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv290008	chr4:150265854-150272474	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150266200-150268400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:150266600-150268600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:150267000-150268400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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